Miyakogusa Predicted Gene

Lj0g3v0111309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111309.1 Non Chatacterized Hit- tr|A2Q3V0|A2Q3V0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,81.82,0.00000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL; coiled-coil,NULL,CUFF.6438.1
         (337 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g24300.1                                                        84   2e-16
Glyma11g04260.1                                                        51   1e-06

>Glyma13g24300.1 
          Length = 40

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/39 (97%), Positives = 39/39 (100%)

Query: 253 CNDEHTVKSRGWLNWLSRGMLGAGGTDDSSQFSGVVSFD 291
           CNDEHTVKSRGWLNWLSRGMLGAGGTDDSSQFSGVVS+D
Sbjct: 2   CNDEHTVKSRGWLNWLSRGMLGAGGTDDSSQFSGVVSYD 40


>Glyma11g04260.1 
          Length = 4131

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 76  SQKVDDNAPQYSLTAELSDLVISLDEVQLQQMFLVWDYVCTCRLREKYGRFRPWHCPLPR 135
           ++  D   P       L D+ IS+ +     +  + D       R KY  +RP    +P 
Sbjct: 272 TEVADSKQPLQKAMVNLDDVTISISKDGYGDIMKLADNFAAFNQRLKYAHYRPL---VPV 328

Query: 136 KCEGWQIFWWHYAQESVLSDVRKKLKKTSWRYLGDRLIFRRNYMNLYKTKLDFLRQEQPV 195
           K +     WW YA ++V   ++K   K SW  +      R+ Y++LY + L     +  +
Sbjct: 329 KADSRS--WWKYAYKAVSDQIKKASGKMSWEQVLRYASLRKRYISLYASLLKSDPTQVTI 386

Query: 196 DDNVLRDLEKMEKESDLDDILNYR 219
             N  +++E +++E D++ IL +R
Sbjct: 387 SGN--KEIEDLDRELDIELILQWR 408