Miyakogusa Predicted Gene

Lj0g3v0109419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109419.1 tr|B9N1H2|B9N1H2_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_743006
PE=4,30.77,1e-17,seg,NULL,CUFF.6285.1
         (285 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g35270.1                                                       105   7e-23
Glyma13g35250.1                                                       100   3e-21
Glyma13g35250.2                                                        99   4e-21
Glyma12g24550.1                                                        80   2e-15
Glyma08g10120.1                                                        71   1e-12
Glyma05g27140.1                                                        63   4e-10
Glyma13g24810.1                                                        57   2e-08
Glyma13g31290.1                                                        55   6e-08
Glyma07g31630.1                                                        55   8e-08
Glyma15g08040.1                                                        55   1e-07
Glyma20g24150.2                                                        52   7e-07
Glyma20g24150.1                                                        52   7e-07
Glyma10g42850.1                                                        52   8e-07

>Glyma12g35270.1 
          Length = 716

 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 211 DGNKRKALDHPVLAKSDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAK 270
           DG   K +D P++  +D+   EILRKF SFKQFDTVED +DHHFF+ NSS+ Q PK WAK
Sbjct: 336 DGFNGKTVDGPIVTITDEAKEEILRKFRSFKQFDTVEDISDHHFFRSNSSMHQPPKNWAK 395

Query: 271 KIQDDWKILEKDLPG 285
           KIQ++W+ILEKDLP 
Sbjct: 396 KIQEEWRILEKDLPA 410



 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 80/166 (48%), Gaps = 53/166 (31%)

Query: 83  IASDSFMDVDEYALLLEAQFDNEDMPPGIEAPFNWL--------SKTGNSTVV------- 127
           I S+ +MDVDEYALL +  FDN D+P GIEAPF WL         KTGN+T+        
Sbjct: 96  ILSEDYMDVDEYALL-QKHFDNVDIPTGIEAPFTWLPPDYVVGSKKTGNNTLYPWHHMQS 154

Query: 128 ------------------------------SSNLQIKMDNVGRYSGTELSPQLFSQAAPN 157
                                         + N+ IKM NV   SG ELS Q  S+ AP+
Sbjct: 155 NANKSPMTPSSQPSLSLEPTNSEIQASSWGAINIPIKMGNVDHSSGVELSSQYISEPAPS 214

Query: 158 KKKSATSQRSGRDLNLSLGKESFKSYWPS------KFSASENHGSV 197
            KKSATS+  GR  N SLG ES KS+W S      K  AS  HG +
Sbjct: 215 -KKSATSKLRGRTSNASLGVESSKSHWSSGPFHSKKKPASTYHGEL 259


>Glyma13g35250.1 
          Length = 674

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 109/257 (42%), Gaps = 101/257 (39%)

Query: 50  GEKESKSDKGKAIASGYDGYVDHQIVEN-------------DNIMGIAS----------- 85
           GEK + S+KGK I + +D   DHQ+V+               ++ GIAS           
Sbjct: 43  GEKVNNSNKGKTIDAVHD---DHQVVKTADYTYSLPGVENFGSVSGIASSNNFPSVSNNM 99

Query: 86  ----------------------DSFMDVDEYALLLEAQFDNEDMPPGIEAPFNWL----- 118
                                 + +MDVDEYALL +  FDN D+PPGIEAPF WL     
Sbjct: 100 INIDGHGSDQSYDDDDYIDILSEDYMDVDEYALL-QKHFDNVDIPPGIEAPFTWLPPDYV 158

Query: 119 ---SKTGNSTVV-------------------------------------SSNLQIKMDNV 138
               KT NST+                                      + N+ IKM NV
Sbjct: 159 VGSKKTENSTLYPWHHMQSNANKSPMTPSSQPSLSLEPTNSKIQASLGSAINIPIKMGNV 218

Query: 139 GRYSGTELSPQLFSQAAPNKKKSATSQRSGRDLNLSLGKESFKSYWPS------KFSASE 192
              SG ELS Q FS+ AP+K KSATS+  G   N SLG ES KS W S      K  AS 
Sbjct: 219 DHSSGAELSSQFFSEPAPSKMKSATSKLRGCTSNASLGVESSKSQWFSRPFHSKKKPAST 278

Query: 193 NHGSVDNPDAMKLPQAA 209
            HG   +P+A KLP A 
Sbjct: 279 YHGFNYHPEATKLPHAG 295



 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 234 LRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDLPG 285
           L K  SFKQFDTVED +DHHFF+ NSS+ Q PK WAKKIQ++W+ILEKDLP 
Sbjct: 377 LLKLQSFKQFDTVEDTSDHHFFRSNSSMHQPPKNWAKKIQEEWRILEKDLPA 428


>Glyma13g35250.2 
          Length = 636

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 85/176 (48%), Gaps = 52/176 (29%)

Query: 85  SDSFMDVDEYALLLEAQFDNEDMPPGIEAPFNWL--------SKTGNSTVV--------- 127
           S+ +MDVDEYALL +  FDN D+PPGIEAPF WL         KT NST+          
Sbjct: 79  SEDYMDVDEYALL-QKHFDNVDIPPGIEAPFTWLPPDYVVGSKKTENSTLYPWHHMQSNA 137

Query: 128 ----------------------------SSNLQIKMDNVGRYSGTELSPQLFSQAAPNKK 159
                                       + N+ IKM NV   SG ELS Q FS+ AP+K 
Sbjct: 138 NKSPMTPSSQPSLSLEPTNSKIQASLGSAINIPIKMGNVDHSSGAELSSQFFSEPAPSKM 197

Query: 160 KSATSQRSGRDLNLSLGKESFKSYWPS------KFSASENHGSVDNPDAMKLPQAA 209
           KSATS+  G   N SLG ES KS W S      K  AS  HG   +P+A KLP A 
Sbjct: 198 KSATSKLRGCTSNASLGVESSKSQWFSRPFHSKKKPASTYHGFNYHPEATKLPHAG 253



 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 234 LRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDLPG 285
           L K  SFKQFDTVED +DHHFF+ NSS+ Q PK WAKKIQ++W+ILEKDLP 
Sbjct: 335 LLKLQSFKQFDTVEDTSDHHFFRSNSSMHQPPKNWAKKIQEEWRILEKDLPA 386


>Glyma12g24550.1 
          Length = 317

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 226 SDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDLP 284
           SD+   EILRKF SFKQFD +ED +DHHF   NSS++Q+   WAK+IQ +WK LEKDLP
Sbjct: 11  SDEARGEILRKFRSFKQFDVIEDVSDHHFVHANSSMEQH---WAKRIQGEWKSLEKDLP 66


>Glyma08g10120.1 
          Length = 375

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 224 AKSDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDL 283
           AK D+  + +L+KF  FKQFDTV+   DHH+ +  +   Q PK WAKKIQ++WKILE++L
Sbjct: 78  AKVDETEDIVLQKFRQFKQFDTVDSFPDHHYDKEETKDAQKPKNWAKKIQEEWKILEENL 137

Query: 284 P 284
           P
Sbjct: 138 P 138


>Glyma05g27140.1 
          Length = 242

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 236 KFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKILEKDLP 284
           KF  FKQFDTV+   DHH+ +  +   Q PK WAKKIQ++WKILE++LP
Sbjct: 43  KFQQFKQFDTVDSFPDHHYDKEGTKDAQKPKNWAKKIQEEWKILEENLP 91


>Glyma13g24810.1 
          Length = 912

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 240 FKQFDTVEDAADHHFFQRNSSLK--QNPKKWAKKIQDDWKILEKDLP 284
           FKQFD +E+  DHHFF     L   Q  + W KK+Q +W ILEK+LP
Sbjct: 627 FKQFDVIENCPDHHFFVEGKGLSTSQVKRSWVKKVQQEWSILEKNLP 673


>Glyma13g31290.1 
          Length = 919

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 18/83 (21%)

Query: 220 HPVL-AKSDDDSNEILRK-----FP----------SFKQFDTVEDAADHHFFQRNSSLK- 262
           HPV   +S  D  E++R      FP            KQFD +++ +DHHF Q    L  
Sbjct: 605 HPVSKMQSSGDICEVIRTHKRNDFPVSLDNKNSLDQLKQFDVIDNCSDHHFIQEGKGLTS 664

Query: 263 -QNPKKWAKKIQDDWKILEKDLP 284
            Q  K W KK+Q +W ILEK+LP
Sbjct: 665 SQFKKGWVKKVQQEWSILEKNLP 687


>Glyma07g31630.1 
          Length = 907

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 240 FKQFDTVEDAADHHFFQRNS--SLKQNPKKWAKKIQDDWKILEKDLP 284
           FKQFD  E+  DHHFF +    S+ Q  + W KK+Q +W ILEK+LP
Sbjct: 629 FKQFDVKENCPDHHFFVQGKGLSISQVKRSWVKKVQQEWSILEKNLP 675


>Glyma15g08040.1 
          Length = 857

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 240 FKQFDTVEDAADHHFFQRNSSLK--QNPKKWAKKIQDDWKILEKDLP 284
            KQFD +++ +DHHFF     L   Q  K W KK+Q +W ILEK+LP
Sbjct: 646 LKQFDVIDNCSDHHFFHEGKGLTSSQFKKGWVKKLQQEWSILEKNLP 692


>Glyma20g24150.2 
          Length = 1122

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 219 DHPVLAKSDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKI 278
           D P  A  D+D+        S K FD  +D +DH+F   N   + N +KW KK+Q DW I
Sbjct: 832 DAPATASCDNDT-------CSLKHFDITKDPSDHYFIGANG--QSNNRKWFKKVQQDWSI 882

Query: 279 LEKDLP 284
           L+ +LP
Sbjct: 883 LQNNLP 888


>Glyma20g24150.1 
          Length = 1122

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 219 DHPVLAKSDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKI 278
           D P  A  D+D+        S K FD  +D +DH+F   N   + N +KW KK+Q DW I
Sbjct: 832 DAPATASCDNDT-------CSLKHFDITKDPSDHYFIGANG--QSNNRKWFKKVQQDWSI 882

Query: 279 LEKDLP 284
           L+ +LP
Sbjct: 883 LQNNLP 888


>Glyma10g42850.1 
          Length = 1065

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 219 DHPVLAKSDDDSNEILRKFPSFKQFDTVEDAADHHFFQRNSSLKQNPKKWAKKIQDDWKI 278
           D P  A  D+D+        S K FD  +D +DH+F   N   + N +KW KK+Q DW I
Sbjct: 775 DAPATASCDNDT-------CSLKHFDITKDPSDHYFIGANG--QSNNRKWFKKVQQDWSI 825

Query: 279 LEKDLP 284
           L+ +LP
Sbjct: 826 LQNNLP 831