Miyakogusa Predicted Gene

Lj0g3v0109299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0109299.1 tr|B9MW42|B9MW42_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_918921 PE=4
SV=1,57.3,2e-16,seg,NULL,TC76323.path1.1
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g27420.2                                                       115   1e-26
Glyma16g27420.1                                                       115   1e-26
Glyma02g08340.1                                                       113   5e-26
Glyma10g36270.1                                                        57   4e-09

>Glyma16g27420.2 
          Length = 528

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 2   SDVFVREDHELHQDHYAXXXXXXXXXXXXDTLKEDFNTSLPGDH-VLGDDSSNHQPKRLP 60
           SD   R + E H DH+A            DTLKEDF +SLP DH VL D SS+HQPKRLP
Sbjct: 433 SDALNRNNVEHHLDHHASPGSHSSSFPSFDTLKEDFASSLPNDHHVLNDKSSSHQPKRLP 492

Query: 61  SMDDDPYFSYPNLFSSQNSNVGSQDHADNSRSTHDL 96
           SMDDD YFSYPNLF+SQNSNVGSQ H+DNSRS HDL
Sbjct: 493 SMDDDTYFSYPNLFTSQNSNVGSQAHSDNSRSPHDL 528


>Glyma16g27420.1 
          Length = 528

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 2   SDVFVREDHELHQDHYAXXXXXXXXXXXXDTLKEDFNTSLPGDH-VLGDDSSNHQPKRLP 60
           SD   R + E H DH+A            DTLKEDF +SLP DH VL D SS+HQPKRLP
Sbjct: 433 SDALNRNNVEHHLDHHASPGSHSSSFPSFDTLKEDFASSLPNDHHVLNDKSSSHQPKRLP 492

Query: 61  SMDDDPYFSYPNLFSSQNSNVGSQDHADNSRSTHDL 96
           SMDDD YFSYPNLF+SQNSNVGSQ H+DNSRS HDL
Sbjct: 493 SMDDDTYFSYPNLFTSQNSNVGSQAHSDNSRSPHDL 528


>Glyma02g08340.1 
          Length = 537

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 2   SDVFVREDHELHQDHYAXXXXXXXXXXXXDTLKEDFNTSLPGDH-VLGDDSSNHQPKRLP 60
           SDV    D E HQDHYA            +TLKEDF +SLP DH VL D SS+HQPKRLP
Sbjct: 434 SDVHNGNDVEHHQDHYASPDSHSSSFPSFETLKEDFASSLPNDHRVLDDKSSSHQPKRLP 493

Query: 61  SMDDDPYFSYPNLFSSQNSNVGSQDHADNSRSTH 94
           SMDDD YFSYPNLF+SQNSNVGSQ H+DNSRS H
Sbjct: 494 SMDDDSYFSYPNLFTSQNSNVGSQAHSDNSRSPH 527


>Glyma10g36270.1 
          Length = 377

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 36/50 (72%)

Query: 31  DTLKEDFNTSLPGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSSQNSN 80
           D  KEDF +SL    VL D SS+HQ KRLPS+DD   FSYPNLF+ +NSN
Sbjct: 321 DIPKEDFGSSLHNHSVLDDKSSHHQLKRLPSLDDYSGFSYPNLFTPKNSN 370