Miyakogusa Predicted Gene

Lj0g3v0107649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107649.1 tr|Q9FPI0|Q9FPI0_ARATH 3'-5'-exoribonuclease
family protein OS=Arabidopsis thaliana
GN=AT3g07750/F17,77.78,4e-19,coiled-coil,NULL; seg,NULL,CUFF.6156.1
         (62 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g26780.1                                                        94   3e-20
Glyma02g07710.1                                                        92   9e-20
Glyma14g00740.1                                                        52   1e-07

>Glyma16g26780.1 
          Length = 286

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M SAVSISVNRQGHICG+TKRGG GLDPSI+LDMISVAKHVSEQLINKL
Sbjct: 225 MSSAVSISVNRQGHICGITKRGGVGLDPSIILDMISVAKHVSEQLINKL 273


>Glyma02g07710.1 
          Length = 286

 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 46/49 (93%)

Query: 1   MISAVSISVNRQGHICGVTKRGGAGLDPSIVLDMISVAKHVSEQLINKL 49
           M S VSISVNRQGHICG+TKRGG GLDPSI+LDMISVAKHVSEQLINKL
Sbjct: 225 MSSGVSISVNRQGHICGITKRGGVGLDPSIILDMISVAKHVSEQLINKL 273


>Glyma14g00740.1 
          Length = 267

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 24/29 (82%)

Query: 7   ISVNRQGHICGVTKRGGAGLDPSIVLDMI 35
            SVNRQGHICG+TKRGG GLDPS +L + 
Sbjct: 232 FSVNRQGHICGITKRGGVGLDPSTILQLF 260