Miyakogusa Predicted Gene

Lj0g3v0106939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106939.1 Non Chatacterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.95,1e-17,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; no descrip,CUFF.6107.1
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09380.1                                                        88   2e-18
Glyma12g29040.1                                                        51   3e-07
Glyma08g20140.1                                                        50   7e-07

>Glyma02g09380.1 
          Length = 532

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 24  LVLKIFHCRSTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQ 75
           L L +    STYATTIRDS+YAREREFLKAVHKCVS GGKVLIPTFALGRAQ
Sbjct: 194 LRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQ 245


>Glyma12g29040.1 
          Length = 689

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           STY       ++ RE+ F   +H  +S GG+VLIP FALGRAQ   L+
Sbjct: 214 STYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 261


>Glyma08g20140.1 
          Length = 688

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           STY       ++ RE+ F   +H  +S GG+VLIP +ALGRAQ   L+
Sbjct: 213 STYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLI 260