Miyakogusa Predicted Gene

Lj0g3v0106869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106869.1 Non Chatacterized Hit- tr|B9RVY3|B9RVY3_RICCO
Cleavage and polyadenylation specificity factor,
putat,83.02,0,CPSF100_C,Cleavage and polyadenylation specificity
factor 2, C-terminal; RMMBL,RNA-metabolising meta,CUFF.6097.1
         (377 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g27560.1                                                       182   7e-46

>Glyma11g27560.1 
          Length = 195

 Score =  182 bits (461), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 87/91 (95%)

Query: 205 VLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 264
           VLVHGSAEATEHLKQHCLK+VCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL
Sbjct: 88  VLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 147

Query: 265 GDYEVAWVDAEVGKAENDTLSLLPVSGATPP 295
           GDYE+AWVDA VGK END LSLLPVSGA PP
Sbjct: 148 GDYEIAWVDAVVGKTENDPLSLLPVSGAAPP 178