Miyakogusa Predicted Gene

Lj0g3v0106609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106609.1 tr|F2EJT9|F2EJT9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,41.67,0.000000000000001,Thioredoxin-like,Thioredoxin-like fold;
seg,NULL; no description,Thioredoxin-like fold; SUBFAMILY
NO,CUFF.6074.1
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g25540.1                                                       108   2e-24
Glyma04g17310.1                                                       103   6e-23
Glyma04g17310.2                                                       102   8e-23

>Glyma11g25540.1 
          Length = 194

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 69/126 (54%), Gaps = 8/126 (6%)

Query: 1   MALFHCHVPSHHXXXXXXXXXXXXXXXXXXXCVSSSSLTH----QHPYXXXXXXXXXXXX 56
           M+LFHCH   HH                     + S LTH    QHPY            
Sbjct: 1   MSLFHCHA-FHHRMATLSPFSPFNSKPLFAFLPNPSFLTHHQQQQHPYPLTKTTTTDLNN 59

Query: 57  XXXXXXXX---XXXCKPPQGKFVRQDYLVEKLSAKEVQDLVKGERDVPLIIDFYATWCGP 113
                         CKPPQGK+VR+DYLV+KLSA+E+Q+LVKGER VPLIIDF+ATWCGP
Sbjct: 60  NRPLSLSTLPRKLLCKPPQGKYVREDYLVKKLSAQEIQELVKGERKVPLIIDFFATWCGP 119

Query: 114 CILMAQ 119
           CILMAQ
Sbjct: 120 CILMAQ 125


>Glyma04g17310.1 
          Length = 192

 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 51/52 (98%)

Query: 68  CKPPQGKFVRQDYLVEKLSAKEVQDLVKGERDVPLIIDFYATWCGPCILMAQ 119
           CKPP+GK+VR+DYLV+KLSA+E+Q+LVKGER VPLIIDFYATWCGPCILMAQ
Sbjct: 72  CKPPKGKYVREDYLVKKLSAQEIQELVKGERKVPLIIDFYATWCGPCILMAQ 123


>Glyma04g17310.2 
          Length = 139

 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 51/52 (98%)

Query: 68  CKPPQGKFVRQDYLVEKLSAKEVQDLVKGERDVPLIIDFYATWCGPCILMAQ 119
           CKPP+GK+VR+DYLV+KLSA+E+Q+LVKGER VPLIIDFYATWCGPCILMAQ
Sbjct: 72  CKPPKGKYVREDYLVKKLSAQEIQELVKGERKVPLIIDFYATWCGPCILMAQ 123