Miyakogusa Predicted Gene

Lj0g3v0104259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104259.1 tr|I3SCY1|I3SCY1_LOTJA DNA primase OS=Lotus
japonicus PE=2 SV=1,98.75,0,DNA_primase_S,DNA primase, small subunit;
DNA PRIMASE SMALL SUBUNIT,DNA primase, small subunit, euka,CUFF.5920.1
         (182 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g45610.1                                                       292   2e-79
Glyma14g03200.1                                                       246   9e-66

>Glyma02g45610.1 
          Length = 434

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/158 (88%), Positives = 146/158 (92%), Gaps = 1/158 (0%)

Query: 4   MITDQELDFNPNYLKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDI 63
           MI  QE DFN N+LKLYYGKLFPF D+ RW+SYGNDGKHPGCD SY GRREFSFTLENDI
Sbjct: 1   MIPQQEPDFNLNHLKLYYGKLFPFADLVRWVSYGNDGKHPGCDQSYIGRREFSFTLENDI 60

Query: 64  YLRFQSFNNALELENSIKEKSPFKIDIGPVYTVDPAKRHAYAQ-GDNKVFAPVERELIFD 122
           YLRFQSF+NALELENSIKEK+P KIDIGPVYTVDPAKR+AYAQ GDN VFAPVERELIFD
Sbjct: 61  YLRFQSFHNALELENSIKEKTPVKIDIGPVYTVDPAKRNAYAQSGDNNVFAPVERELIFD 120

Query: 123 IDMSDYDDVRYCCSGADVCLNCWPLMTIAIKVIDTALR 160
           IDMSDYDDVRYCCSGADVCL CWPLMTIAIKVIDTALR
Sbjct: 121 IDMSDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALR 158


>Glyma14g03200.1 
          Length = 453

 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 133/159 (83%), Gaps = 9/159 (5%)

Query: 3   KMITDQELDFNPNYLKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLEND 62
           +MI  QE DFN N+LKLYYGKLFPF D+ RW+SYGNDGKHPGCD SY GRREFSFTLEND
Sbjct: 27  QMIPHQEPDFNLNHLKLYYGKLFPFVDLVRWVSYGNDGKHPGCDQSYIGRREFSFTLEND 86

Query: 63  IYLRFQSFNNALELENSIKEKSPFKIDIGPVYTVDPAKRHAYAQ-GDNKVFAPVERELIF 121
           IYLRFQSF+NA ELENSIKEK P KIDIGPVYTVDPAKR+AYAQ GDN VFAPVERELIF
Sbjct: 87  IYLRFQSFHNAHELENSIKEKCPVKIDIGPVYTVDPAKRNAYAQSGDNNVFAPVERELIF 146

Query: 122 DIDMSDYDDVRYCCSGADVCLNCWPLMTIAIKVIDTALR 160
           DI +       + C  ADVCL CWPLMT AIKVIDTALR
Sbjct: 147 DIIL------LFGC--ADVCLVCWPLMTTAIKVIDTALR 177