Miyakogusa Predicted Gene

Lj0g3v0103959.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103959.4 Non Chatacterized Hit- tr|B7FID7|B7FID7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.56,0,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.5917.4
         (215 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g14240.1                                                       240   8e-64
Glyma05g31030.1                                                       237   8e-63
Glyma08g18970.1                                                       196   2e-50
Glyma15g06030.1                                                       196   2e-50
Glyma10g33490.1                                                       180   1e-45
Glyma20g34100.1                                                       179   2e-45
Glyma03g25850.1                                                        53   3e-07
Glyma15g42810.1                                                        50   2e-06

>Glyma08g14240.1 
          Length = 220

 Score =  240 bits (613), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 130/220 (59%), Positives = 134/220 (60%), Gaps = 5/220 (2%)

Query: 1   MDEEEHEVYGGEIPDVGXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 55
           M+EEEHEVYGGEIPD G                                           
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIDMSAADDEAAVDDDAAVKELDEMKRRLKEMEEEAAAL 60

Query: 56  XXXQAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVN 115
              QAKVEKEIG+VQDP     SQANKEE D RSVFVGNVDYACTPEEVQQHFQSCGTVN
Sbjct: 61  REMQAKVEKEIGSVQDPANAAASQANKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVN 120

Query: 116 RVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPR 175
           RVTILTDKFGQPKGF              L LNESELHGRQLKVLPKRTNVPGMKQYRPR
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 180

Query: 176 RYDPYMAYGXXXXXXXXXXXXXXXGKVPRFRRPARYMPYY 215
            ++PYMAYG               GKVPRFRRP RYMPYY
Sbjct: 181 CFNPYMAYGFRRPYTPYLYSPYGYGKVPRFRRPNRYMPYY 220


>Glyma05g31030.1 
          Length = 215

 Score =  237 bits (604), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 135/216 (62%), Gaps = 2/216 (0%)

Query: 1   MDEEEHEVYGGEIPDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQA 60
           M+EEEHEVYGGEIPD G                                         QA
Sbjct: 1   MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREM-QA 59

Query: 61  KVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 120
           KV+KEIG+VQDP     SQANKEE D RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL
Sbjct: 60  KVDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 119

Query: 121 TDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDPY 180
           TDKFGQPKGF              L LNESELHGRQLKVLPKRTNVPGMKQYRPRR++PY
Sbjct: 120 TDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPY 179

Query: 181 MAYGXXX-XXXXXXXXXXXXGKVPRFRRPARYMPYY 215
           MAYG                GKVPRFRRP RYMPY+
Sbjct: 180 MAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH 215


>Glyma08g18970.1 
          Length = 197

 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 110/160 (68%), Gaps = 3/160 (1%)

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAKVEKE+G+VQDP     SQANKEE D RSVFVGNVDY+CTPEEVQQHFQSCGTVNR+T
Sbjct: 38  QAKVEKEMGSVQDPANASASQANKEEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRIT 97

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRY- 177
           I TDKFGQPKG+              L LNESELHGRQLKV  KRTN+PGMKQYRPRR  
Sbjct: 98  IRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRST 157

Query: 178 DPYMA--YGXXXXXXXXXXXXXXXGKVPRFRRPARYMPYY 215
           +PYM    G               GKVPRFR   R+ PYY
Sbjct: 158 NPYMGGLRGRTPYAAPFIYSPYGYGKVPRFRMAMRHSPYY 197


>Glyma15g06030.1 
          Length = 197

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 109/160 (68%), Gaps = 3/160 (1%)

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAKVEKE+G+ QDP     SQANKEE D RSVFVGNVDY+CTPEEVQQHFQSCGTVNRVT
Sbjct: 38  QAKVEKEMGSAQDPANASASQANKEEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVT 97

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR-Y 177
           I TDKFGQPKG+              L LNESELHGRQLKV  KRTN+PGMKQYRPRR  
Sbjct: 98  IRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRTI 157

Query: 178 DPYMA--YGXXXXXXXXXXXXXXXGKVPRFRRPARYMPYY 215
           +PYM    G               GKVPRFR   RY PYY
Sbjct: 158 NPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 197


>Glyma10g33490.1 
          Length = 214

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 104/178 (58%), Gaps = 2/178 (1%)

Query: 1   MDEEEHEVYGGEIPD--VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 58
           M++EEHEVYG +IPD  +                                          
Sbjct: 1   MEQEEHEVYGADIPDEEIDMDADAEQQDEQLAPNHTNKELEDMKKRLKEIEEEASALREM 60

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAKVEKE+G VQD      +QA KEE D RS++VGNVDYACTPEEVQQHFQSCGTVNRVT
Sbjct: 61  QAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 120

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR 176
           ILTDKFGQPKGF              L LNESELHGRQLKV  KRTNVPGMKQY  RR
Sbjct: 121 ILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRR 178


>Glyma20g34100.1 
          Length = 214

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 103/178 (57%), Gaps = 2/178 (1%)

Query: 1   MDEEEHEVYGGEIPD--VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 58
           M++EEHEVYG +IPD  +                                          
Sbjct: 1   MEQEEHEVYGADIPDEEIDMDADAEQQDEQLAPNHTNKELEDMKKRLKEIEEEASALREM 60

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAKVEKE+G VQD      +Q  KEE D RS++VGNVDYACTPEEVQQHFQSCGTVNRVT
Sbjct: 61  QAKVEKEMGAVQDSSGTSATQVEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 120

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR 176
           ILTDKFGQPKGF              L LNESELHGRQLKV  KRTNVPGMKQY  RR
Sbjct: 121 ILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRR 178


>Glyma03g25850.1 
          Length = 208

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 82  KEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFXXXXXXXXXX 140
            E+ D R++FV NV +A T + + +HF   G V +V I+TD   GQPKG           
Sbjct: 64  SEDVDSRTIFVSNVHFAATKDGLSRHFNRFGEVLKVIIVTDAAIGQPKGAAYVEFMRKEA 123

Query: 141 XXXXLRLNESELHGRQLKVL 160
               L L+ +    R LKV 
Sbjct: 124 ADNALSLDNTSFMSRILKVF 143


>Glyma15g42810.1 
          Length = 666

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 83  EETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFXXXXXXXXXXX 141
           E+ D R++FV NV +A T + + +HF   G V +V I+TD   GQPKG            
Sbjct: 466 EDVDSRTIFVSNVHFAATKDGLSRHFNRFGDVLKVIIVTDAATGQPKGAAYVEFMRKEAA 525

Query: 142 XXXLRLNESELHGRQLKVLPK----RTNVPGMKQYRPRRYDPY 180
              L L+ +    R LKV+ K    + + P M   R  +  P+
Sbjct: 526 DNALSLDNTSFMSRILKVIKKSATPQESAPAMAWPRIVKGSPF 568