Miyakogusa Predicted Gene

Lj0g3v0103829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103829.1 tr|D8RN79|D8RN79_SELML DNA-directed RNA
polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_41306,30.46,9e-19,RNA_pol_Rpb1_5,RNA polymerase Rpb1,
domain 5; DNA-DIRECTED RNA POLYMERASE,NULL; beta and beta-prime
,CUFF.5895.1
         (339 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g26690.1                                                       592   e-169
Glyma15g37710.1                                                       585   e-167
Glyma04g11810.1                                                       129   3e-30
Glyma01g42480.1                                                        93   4e-19
Glyma11g02920.1                                                        89   8e-18
Glyma11g08610.3                                                        76   6e-14
Glyma11g08610.1                                                        76   6e-14
Glyma11g08610.2                                                        76   6e-14
Glyma01g36700.2                                                        72   7e-13
Glyma01g36700.1                                                        72   7e-13
Glyma09g41550.1                                                        68   1e-11

>Glyma13g26690.1 
          Length = 1820

 Score =  592 bits (1527), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 275/340 (80%), Positives = 311/340 (91%), Gaps = 1/340 (0%)

Query: 1   MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
           MES+F+ GFSV L +FSIS A+KR+  R+IGK S LLYQLR +YNELVAQQLEKH+QD+E
Sbjct: 429 MESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHIQDVE 488

Query: 61  LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
           LP I F  KS++LGD+IDSKSKS +DKV QQ+GFLGQQLF RGR YSKGL++DVASHF  
Sbjct: 489 LPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGLVDDVASHFHA 548

Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
           KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 549 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 608

Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
           ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDKT +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 609 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMSNPAYKAV 668

Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
           LDASP+S+ SWELMKEILLCKVNFRNEP+DRRVILYLNDCDCG   CRENAAY VKNQLR
Sbjct: 669 LDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQLR 728

Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
           KVSLK+ AV+FI+EYQQQR ++E SETDAGLVGHI+LDE+
Sbjct: 729 KVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEM 768


>Glyma15g37710.1 
          Length = 2101

 Score =  585 bits (1508), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 275/340 (80%), Positives = 312/340 (91%), Gaps = 1/340 (0%)

Query: 1   MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
           MES+F+ GFSV L +FSIS A+KR+  ++IGKVS LLYQLR +YNELVAQQLEKH++D+E
Sbjct: 613 MESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLEKHIRDVE 672

Query: 61  LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
           LP I F  KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RGR YSKGL++DVASHF  
Sbjct: 673 LPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDDVASHFHA 732

Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
           KC YDGDGYPSAEYGLL+GCFF+GLDP+EE+VHSISTREIMVRSSRGLSEPGTLFKNLMA
Sbjct: 733 KCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMA 792

Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
           ILRDVV+CYDGTVRN+CSNSIIQFEYG++AGDK+ +LFPAGEPVGVLAAT+MSNPAYKAV
Sbjct: 793 ILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNPAYKAV 852

Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
           LDASPSS+ SWELMKEILLCKVNFRNE +DRRVILYLNDCDCG  YCRENAAY VK+QLR
Sbjct: 853 LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLR 912

Query: 301 KVSLKDTAVDFIVEYQQQR-KREGSETDAGLVGHIHLDEV 339
           KVSLKD AV+FI+EYQQQR ++E SETD GLVGHI+LDE+
Sbjct: 913 KVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEM 952


>Glyma04g11810.1 
          Length = 154

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 74/91 (81%)

Query: 1   MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
           MES+F  GFSV L +F IS A+KR+  R+IGK S LLYQLR +YNELVAQQLEKH+QD+E
Sbjct: 64  MESLFVEGFSVSLEEFKISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHIQDVE 123

Query: 61  LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQ 91
           LP I F  KS++LGD+IDSKSKS +DKV QQ
Sbjct: 124 LPIINFALKSTKLGDLIDSKSKSTIDKVVQQ 154


>Glyma01g42480.1 
          Length = 1376

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 133/315 (42%), Gaps = 56/315 (17%)

Query: 56  MQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLG------------------- 96
            ++I+  A K+  K +    M  + SK  L K+ Q    LG                   
Sbjct: 636 FRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCA 695

Query: 97  ---QQLFVRGRLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVH 153
               Q +V     S G LE V S+                Y ++   F  GL+P E  VH
Sbjct: 696 DWNSQKWVDSIQMSSGTLESVQSYIP--------------YAVVESSFLTGLNPLECFVH 741

Query: 154 SISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDK 213
           S++ R+        L  PGTL + LM  +RD+   YDGTVRN+  N +IQF Y ++    
Sbjct: 742 SVTNRDSSFSDHADL--PGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSS 799

Query: 214 TRYLFP----AGEPVGVLAATSMSNPAYKA------VLDASPSSSCSWELMKEILLCKVN 263
               F      GE VG ++A ++S  AY A      +L+ SP  +     +K +L C   
Sbjct: 800 CNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLN-----LKNVLECGSR 854

Query: 264 FRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREG 323
            RN   D+ V L+L++    +R+  E AA  VKN L ++   +     ++ +     R  
Sbjct: 855 KRNG--DQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSR-S 911

Query: 324 SETDAGLVGHIHLDE 338
            E  +  V H HLD+
Sbjct: 912 QEKYSPWVCHFHLDK 926


>Glyma11g02920.1 
          Length = 1385

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 24/210 (11%)

Query: 141 FFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNS 200
           F  GL+P E  VHS++ R+        L  PGTL + LM  +RD+   YDGTVRN+  N 
Sbjct: 737 FLTGLNPLECFVHSVTNRDSSFSDHADL--PGTLTRRLMFFMRDLHDAYDGTVRNLYGNQ 794

Query: 201 IIQFEYGVKAGDKTRYLFP----AGEPVGVLAATSMSNPAYKA------VLDASPSSSCS 250
           +IQF Y ++        F      GEPVG ++A ++S  AY A      +L+ SP  +  
Sbjct: 795 LIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAAYSALGQPVSLLETSPLLN-- 852

Query: 251 WELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVD 310
              +K +L C    RN   D+ V L+L++    +R+  E AA  VKN L ++   +    
Sbjct: 853 ---LKNVLECGSRKRNG--DQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVST 907

Query: 311 FIVEYQQQRKREGS--ETDAGLVGHIHLDE 338
            ++ +      +GS  E  +  V H HLD+
Sbjct: 908 VMIIFTPH---DGSSQEKYSPWVCHFHLDK 934


>Glyma11g08610.3 
          Length = 1831

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)

Query: 4   IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
           +  N FS+G+ D     +     ++ I      + QL              R + +    
Sbjct: 679 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFEN 738

Query: 48  -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
            V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G+  
Sbjct: 739 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797

Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
             G ++    HF        D Y     G +   +  GL P E   H++  RE ++ ++ 
Sbjct: 798 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851

Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
             SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896


>Glyma11g08610.1 
          Length = 1831

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)

Query: 4   IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
           +  N FS+G+ D     +     ++ I      + QL              R + +    
Sbjct: 679 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFEN 738

Query: 48  -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
            V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G+  
Sbjct: 739 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797

Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
             G ++    HF        D Y     G +   +  GL P E   H++  RE ++ ++ 
Sbjct: 798 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851

Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
             SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896


>Glyma11g08610.2 
          Length = 1807

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 25/226 (11%)

Query: 4   IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
           +  N FS+G+ D     +     ++ I      + QL              R + +    
Sbjct: 679 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKLEAEPGRTMMDSFEN 738

Query: 48  -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
            V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G+  
Sbjct: 739 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797

Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
             G ++    HF        D Y     G +   +  GL P E   H++  RE ++ ++ 
Sbjct: 798 PYGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851

Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
             SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896


>Glyma01g36700.2 
          Length = 1831

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)

Query: 4   IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
           +  N FS+G+ D     +     ++ I      + QL              R + +    
Sbjct: 679 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPGRSMMDSFEN 738

Query: 48  -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
            V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G+  
Sbjct: 739 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797

Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
             G ++    HF        D       G +   +  GL P E   H++  RE ++ ++ 
Sbjct: 798 PYGFIDRTLPHFT------KDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851

Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
             SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896


>Glyma01g36700.1 
          Length = 1831

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 25/226 (11%)

Query: 4   IFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQL--------------RFIYNEL-- 47
           +  N FS+G+ D     +     ++ I      + QL              R + +    
Sbjct: 679 LLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKLEAEPGRSMMDSFEN 738

Query: 48  -VAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLY 106
            V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G+  
Sbjct: 739 RVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRI 797

Query: 107 SKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSR 166
             G ++    HF        D       G +   +  GL P E   H++  RE ++ ++ 
Sbjct: 798 PYGFIDRTLPHFT------KDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 851

Query: 167 GLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
             SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 852 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 896


>Glyma09g41550.1 
          Length = 1683

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 44  YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
           +   V Q L K   D    A   +S+S+ L  M+ + SK +   ++Q    +GQQ  V G
Sbjct: 732 FENRVNQTLNKARDDAGNSAGNSLSESNNLKAMVTAGSKGSNINISQMTACVGQQ-NVEG 790

Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
           +    G ++    HF        D +     G +   +  GL P E   H++  RE ++ 
Sbjct: 791 KRIPYGFVDRTLPHFT------KDDHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 844

Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
           ++   SE G + + L+  + D+++ YDGTVRN   + +IQF YG    D
Sbjct: 845 TAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNSLGD-VIQFLYGEDGMD 892