Miyakogusa Predicted Gene

Lj0g3v0103089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103089.1 tr|F2E5W3|F2E5W3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.48,4e-19,ZF_RANBP2_1,Zinc finger, RanBP2-type; Ran BP2/NZF
zinc finger-like,NULL; ZF_RANBP2_2,Zinc finger, Ra,CUFF.5827.1
         (227 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g08780.1                                                       183   1e-46

>Glyma18g08780.1 
          Length = 395

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 141/238 (59%), Gaps = 27/238 (11%)

Query: 1   MAEGIPGFGNWFDLPGRRLGGYSPQHPFS--------AAEKWSQVGSLLPSGPRPKRLGG 52
           MA+GI G G  FDLPGRRLGGYS Q P S        AAEK  Q+GSLLPSGP  KRLGG
Sbjct: 124 MAKGISGAGEGFDLPGRRLGGYSRQPPLSSLRKTALEAAEKRVQLGSLLPSGP--KRLGG 181

Query: 53  DIVTXXXXXXXXXXXXXXXXXXXDNIWCG---CEHSDHEDEDVSYESAENIVHKRKIVGS 109
           D V                    D++WCG   CE+ DHED  V YE AENIVHK + VGS
Sbjct: 182 DSVIMRALSPVQAAAMAAERRLQDDVWCGSQSCENLDHED--VDYEVAENIVHKGENVGS 239

Query: 110 TKLTNNSTLPWDQVSQKRSR-SKDLILPIHSSSASMFIDLTED------EQEVGSITQHR 162
           ++ T+NSTLP + +S+KRS+ +   +    SSS S F+DLT D      ++E  +  + R
Sbjct: 240 SRQTDNSTLPSNLLSRKRSQDTNSSLPAKSSSSTSEFVDLTMDTPKSRPDKEHQTGPKRR 299

Query: 163 NFGLESVSDSQFNSQAGSSSHSEEPAMWECPMCTLLNMTSASICEFCDTQQPKDVTTK 220
             G ES S SQ N QAGS S      MWEC MCTLLN   A ICE C TQQPKD +TK
Sbjct: 300 CGGSESFSHSQSNYQAGSKS-----GMWECTMCTLLNKRLAPICELCGTQQPKDFSTK 352