Miyakogusa Predicted Gene
- Lj0g3v0102449.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0102449.1 tr|G7IRD7|G7IRD7_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_2g086070 PE=4
SV=1,67.57,0.0000008,NAD(P)-binding Rossmann-fold domains,NULL; no
description,NAD(P)-binding domain; Sterile,Fatty acyl-,CUFF.5778.1
(246 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma12g30870.1 399 e-111
Glyma13g39440.1 395 e-110
Glyma12g09270.1 383 e-106
Glyma11g19150.1 375 e-104
Glyma11g19160.1 349 2e-96
Glyma13g39450.1 328 4e-90
Glyma12g30850.1 323 9e-89
Glyma11g19170.1 296 1e-80
Glyma11g19190.1 216 1e-56
Glyma02g26670.1 167 9e-42
Glyma08g25140.1 112 4e-25
>Glyma12g30870.1
Length = 490
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/246 (76%), Positives = 209/246 (84%), Gaps = 1/246 (0%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLVEQLKG L VVI+RPTIVTST +EPFPGW+EGVRTIDSLAV YGKGKL CFLG++NGV
Sbjct: 246 MLVEQLKGSLSVVIMRPTIVTSTLREPFPGWAEGVRTIDSLAVTYGKGKLKCFLGNINGV 305
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
VDV+P QPSD YHVGSS+RNP+TY NLQDYGL+YFTAKPWIN
Sbjct: 306 VDVVPADMVVNAMLVAMVAHAKQPSD-IVYHVGSSLRNPLTYLNLQDYGLKYFTAKPWIN 364
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
KDG+ VKVGRV VLTDM SF+RYMFIRYLLPLKGL+LANT CQYF+GTYLEL+RKIQVV
Sbjct: 365 KDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLKGLELANTALCQYFRGTYLELHRKIQVV 424
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGI 240
MR+VELYRPY+FF GVFDDMNTEKLR+AA+Q TE DLFYFD K+++WDDYFM TH+PGI
Sbjct: 425 MRMVELYRPYMFFDGVFDDMNTEKLRMAAKQSGTETDLFYFDTKEVNWDDYFMKTHLPGI 484
Query: 241 VKYIFK 246
VKYIFK
Sbjct: 485 VKYIFK 490
>Glyma13g39440.1
Length = 383
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLVEQLKG L VVI+RPTIVTST +EPFPGW EGVRTIDSLAV YGKGKLTCFLG++NGV
Sbjct: 139 MLVEQLKGRLSVVIMRPTIVTSTLREPFPGWVEGVRTIDSLAVTYGKGKLTCFLGNINGV 198
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
VD +P NQPSD YHVGSS+RNP+TY NLQDYGL+YFTAKPWIN
Sbjct: 199 VDAVPADMVVNAMLVAMVAHANQPSD-IIYHVGSSLRNPLTYLNLQDYGLKYFTAKPWIN 257
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
KDG+ VKVGRV VLTDM SF+RYMFIRYLLPLKGL+LANT CQYF+GTYLEL+RKIQVV
Sbjct: 258 KDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLKGLELANTALCQYFRGTYLELHRKIQVV 317
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGI 240
MR+VELYRPY+FF+GVFDD+NTEKLRIAA+Q TE DLFYFD K+++W+DYFM TH+PGI
Sbjct: 318 MRMVELYRPYMFFNGVFDDINTEKLRIAAKQSGTETDLFYFDTKEVNWEDYFMKTHLPGI 377
Query: 241 VKYIFK 246
VK++FK
Sbjct: 378 VKHVFK 383
>Glyma12g09270.1
Length = 493
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/246 (72%), Positives = 199/246 (80%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLVEQLKG+L VV +RPTIVTSTFKEPFPGW+EGVRTIDSLAV YGKGKLTCFLGDL +
Sbjct: 248 MLVEQLKGNLSVVTIRPTIVTSTFKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAI 307
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
VD IP N PSD YHVGSSVR P+ Y NLQ+YG RYFTAKP IN
Sbjct: 308 VDAIPADMVVNAILVAMVAHANHPSDDVIYHVGSSVRRPLRYGNLQEYGFRYFTAKPCIN 367
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
KDG VKVG+V VL++M SFRRYMFIRYLL LKGL+LANT FCQYF+GTYL LNRKIQ+V
Sbjct: 368 KDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLKGLELANTAFCQYFQGTYLNLNRKIQIV 427
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGI 240
MRLV+LY+PYLFF FDDMNTEKLR+AARQG E DLFYFDP+ IDW+DYF+N H+PG+
Sbjct: 428 MRLVDLYKPYLFFKAAFDDMNTEKLRMAARQGGVETDLFYFDPELIDWEDYFLNIHLPGV 487
Query: 241 VKYIFK 246
VKYI K
Sbjct: 488 VKYILK 493
>Glyma11g19150.1
Length = 493
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/246 (70%), Positives = 199/246 (80%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLVEQLKG+L VVI+RP+IVTST KEPFPGW+EGVRTIDSLAV YGKGKLTCFLGDL +
Sbjct: 248 MLVEQLKGNLSVVIIRPSIVTSTLKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAI 307
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
VD IP N+PSD YH+GSSVR P+ Y LQ+YG RYFTAKP I+
Sbjct: 308 VDAIPADMVVNAILVAMVAHANRPSDDVIYHIGSSVRRPLRYGKLQEYGFRYFTAKPCIS 367
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
KDG VKVG+V VL++M SFRRYMFIRYLL LKGL+LANT FCQYF+GTYL+LNRKIQ+V
Sbjct: 368 KDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLKGLELANTAFCQYFQGTYLDLNRKIQIV 427
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGI 240
MRLV+LY+PYLFF FDDMNTEKLR+A RQG E DLFYFDP+ IDW+DYF+N H+PG+
Sbjct: 428 MRLVDLYKPYLFFKAAFDDMNTEKLRMAGRQGGVETDLFYFDPELIDWEDYFLNIHLPGM 487
Query: 241 VKYIFK 246
VKYI K
Sbjct: 488 VKYILK 493
>Glyma11g19160.1
Length = 432
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/248 (66%), Positives = 193/248 (77%), Gaps = 2/248 (0%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
ML+E LK ++ VVI+RPT+VTST++EPFPGW EGVRTIDSL V YGKGKLTCFL D+
Sbjct: 185 MLIETLKENVSVVIVRPTMVTSTYREPFPGWVEGVRTIDSLIVAYGKGKLTCFLADIKAT 244
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
DVIP N+P D YHVGSS+ NPV YHNLQDYG RYF AKP++N
Sbjct: 245 FDVIPADMVVNAIISTMVAHANKPCDNIIYHVGSSLENPVRYHNLQDYGFRYFKAKPYVN 304
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
K+G+ V V +V VL MASF+RYMFIRY LPLKGL+LAN FCQYF+ TYL++ RKI V
Sbjct: 305 KEGNYVMVRKVTVLDSMASFQRYMFIRYFLPLKGLELANAAFCQYFQRTYLDIRRKIYTV 364
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQG--ETEKDLFYFDPKDIDWDDYFMNTHIP 238
MRLV+LYRPYLFF+GVFD+MNT+KLRIAAR+ E E+ LFYFDPK IDW+DYFMN HIP
Sbjct: 365 MRLVDLYRPYLFFNGVFDNMNTKKLRIAARESGVEMEEYLFYFDPKMIDWEDYFMNIHIP 424
Query: 239 GIVKYIFK 246
GIVKY+FK
Sbjct: 425 GIVKYVFK 432
>Glyma13g39450.1
Length = 490
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 154/246 (62%), Positives = 183/246 (74%), Gaps = 1/246 (0%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLV KG++ VVI+RPT+VTST EPFPGW EG+RTIDS+ V YGKGKL CFL +L V
Sbjct: 246 MLVGTTKGNMNVVIVRPTMVTSTHTEPFPGWIEGLRTIDSIVVAYGKGKLACFLANLKAV 305
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
DVIP NQPSD YH+GSSV NPV Y NL+DY +RYF PWIN
Sbjct: 306 FDVIPADMVVNTMLVAMVAHANQPSD-IIYHLGSSVVNPVKYLNLRDYSVRYFMENPWIN 364
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
KDG VKVG+V +L++M SFR+YM+IRYLLPLKGL+L N CQYF+ YL+ NRKI+ V
Sbjct: 365 KDGKPVKVGKVTILSNMDSFRKYMYIRYLLPLKGLELVNAVSCQYFQKMYLDFNRKIRTV 424
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPGI 240
MRLVELY+PYLFF+GVFD+MNTEKL +ARQG E + FYFDPK IDW+DYF+N H PGI
Sbjct: 425 MRLVELYKPYLFFNGVFDNMNTEKLLSSARQGGVETEFFYFDPKMIDWEDYFINIHFPGI 484
Query: 241 VKYIFK 246
+K+ K
Sbjct: 485 IKHALK 490
>Glyma12g30850.1
Length = 496
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 185/252 (73%), Gaps = 7/252 (2%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLV KG++ VVI+RPT+VTST+KEPFPGW EG+RTIDS+ V YGKGKL CFL +L V
Sbjct: 246 MLVGTTKGNMNVVIVRPTMVTSTYKEPFPGWIEGLRTIDSIVVAYGKGKLVCFLANLEAV 305
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
DVIP NQPSD YHVGSSV NPV Y NL+DY +RYFT KPWIN
Sbjct: 306 FDVIPADMVVNAMLVAMVAHANQPSD-IIYHVGSSVVNPVMYLNLRDYSVRYFTEKPWIN 364
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
+DG VKVG+ +L +M SFR+YM+IRYLLPLKGL+L N CQYF+ YL+ NRKI+ V
Sbjct: 365 RDGKPVKVGKFTILRNMDSFRKYMYIRYLLPLKGLELVNAASCQYFQKMYLDFNRKIRTV 424
Query: 181 MRLVELYRPYLFFSGV------FDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMN 234
+RLVELY+PYLFF+GV FD+ NTEKL +ARQG E +LFYFD K IDW+DYF+N
Sbjct: 425 LRLVELYKPYLFFNGVACFAHRFDNTNTEKLLSSARQGGVETELFYFDTKMIDWEDYFIN 484
Query: 235 THIPGIVKYIFK 246
H PGI+KY FK
Sbjct: 485 IHFPGIIKYAFK 496
>Glyma11g19170.1
Length = 475
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 173/247 (70%), Gaps = 18/247 (7%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
MLVE LK ++ V+I+RPT++TST+KEPFPGW EGVRTIDS+ V YGKGKL CFL D+N +
Sbjct: 246 MLVETLKKNMSVIIVRPTMITSTYKEPFPGWVEGVRTIDSVIVAYGKGKLPCFLLDINAI 305
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
DVIP NQP D Y VGSS+ NP+ YHNL+DY RYF AKPW+N
Sbjct: 306 FDVIPADMVVNAIITTLVAHANQPCDNIIYQVGSSIANPIRYHNLKDYIYRYFKAKPWVN 365
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
K+G+ V VG+V VL M SF+RYMFIRYLLPLK + N K +
Sbjct: 366 KEGNPVMVGKVTVLDTMTSFQRYMFIRYLLPLK-----------------VVYNYKASQL 408
Query: 181 MRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDL-FYFDPKDIDWDDYFMNTHIPG 239
M+LV+LY+PY+FF GVFD+MNTEKL+ A RQGE E + FYFDPK IDW+DYFMN HIPG
Sbjct: 409 MQLVDLYKPYVFFKGVFDNMNTEKLQTAVRQGEVEMEYSFYFDPKMIDWEDYFMNIHIPG 468
Query: 240 IVKYIFK 246
IVKY+FK
Sbjct: 469 IVKYVFK 475
>Glyma11g19190.1
Length = 484
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 146/249 (58%), Gaps = 13/249 (5%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
M++ +KGD+P++I RPT V ST EPFPGW EGVRT+D V YGKGKL
Sbjct: 246 MILFNMKGDVPLIIARPTTVLSTHSEPFPGWIEGVRTVDVFVVLYGKGKLR--------- 296
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQAT--YHVGSSVRNPVTYHNLQDYGLRYFTAKPW 118
IP S T YH+GSS+RNP T +L+D +YFT P
Sbjct: 297 -RSIPADMVINSMIIALLEAQYSKSLSKTLLYHIGSSLRNPFTISDLEDVAYQYFTKNPL 355
Query: 119 INKDGSSVKVG-RVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKI 177
INK+G V + +V ++ M+SF RYM IRY+LPL GL + + C + ++E RK+
Sbjct: 356 INKNGKPVAISNKVTWISSMSSFERYMKIRYVLPLMGLNVVSKVCCHCYDDFHMESQRKL 415
Query: 178 QVVMRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHI 237
Q +M++ LY+PYL F G FDD N E LR+A + + F FDP++IDW DY +N HI
Sbjct: 416 QTLMKITRLYKPYLLFEGTFDDKNAEILRMAKNKAGDDLGRFNFDPRNIDWMDYVLNAHI 475
Query: 238 PGIVKYIFK 246
PG+VKY+ K
Sbjct: 476 PGLVKYVVK 484
>Glyma02g26670.1
Length = 563
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
M++++L+GD+PVV++RP+++ STF EPFPGW EG R +D + + YGKG+LT FL D NGV
Sbjct: 318 MMIDKLRGDIPVVVMRPSVIESTFSEPFPGWMEGNRMMDPIVLCYGKGQLTGFLVDPNGV 377
Query: 61 VDVIPX-XXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWI 119
+DV+P +Q D Y + SSV NP+ + +L ++++ P I
Sbjct: 378 LDVVPADMVVNATLAAMARHGVSQKPDINVYQIASSVVNPLVFQDLARLLYEHYSSSPCI 437
Query: 120 NKDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQV 179
+ G ++V + + + F +++ R + +GL ++ + + + ++
Sbjct: 438 DSKGRPIQVPLMKLFSSTEEFSGHLW-RDAIQKRGLTAVASSKGKMSQKLENMCRKSVEQ 496
Query: 180 VMRLVELYRPYLFFSGVFDDMNTEKLRIAARQGETEKDLFYFDPKDIDWDDYFMNTHIPG 239
L +Y PY F+ G FD+ NT+ R+ E EK F FD K IDW+DY N HIPG
Sbjct: 497 AKYLANIYEPYTFYGGRFDNSNTQ--RLMESMSEKEKREFGFDVKSIDWNDYITNVHIPG 554
Query: 240 IVKYIFK 246
+ +++ K
Sbjct: 555 LRRHVMK 561
>Glyma08g25140.1
Length = 432
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 1 MLVEQLKGDLPVVILRPTIVTSTFKEPFPGWSEGVRTIDSLAVNYGKGKLTCFLGDLNGV 60
+L+ ++K LP+ ++RPT V ST EPFPGW EGVRTID + VNYG+G LT F+G+ +
Sbjct: 219 ILLMKMKDTLPLFVIRPTTVVSTHSEPFPGWIEGVRTIDFVVVNYGQGILTSFVGNSETI 278
Query: 61 VDVIPXXXXXXXXXXXXXXXXNQPSDQATYHVGSSVRNPVTYHNLQDYGLRYFTAKPWIN 120
+D+IP S YH+GSS+RNP+ ++ D YF P ++
Sbjct: 279 LDLIPVDMVVNFMIVALMALSKGLSKNLVYHIGSSLRNPIKLTDVVDAMYYYFKKNPCVD 338
Query: 121 KDGSSVKVGRVNVLTDMASFRRYMFIRYLLPLKGLKLANTTFCQYFKGTYLELNRKIQVV 180
K G + M + L + G N +F + + ++V
Sbjct: 339 KYG------------------KLMAVTKKLTITGANEFNQNKVHFFHES-----QGSKLV 375
Query: 181 MRLVELYRPYLFFSG------VFDDMNTEKLRIAAR 210
+ +LY+ Y F G +FD N E LRI +
Sbjct: 376 KKTEDLYKTYSLFKGMYVPYTIFDVKNAESLRIVTK 411