Miyakogusa Predicted Gene

Lj0g3v0102289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102289.1 Non Chatacterized Hit- tr|I3SC80|I3SC80_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.06,0,DNA_pol3_delta2,NULL; Rep_fac_C,Replication factor C,
C-terminal domain; REPLICATION FACTOR C / DNA ,CUFF.5766.1
         (321 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g42550.2                                                       129   6e-30
Glyma04g42550.1                                                       128   6e-30
Glyma06g11980.1                                                       128   6e-30
Glyma04g42550.4                                                       128   8e-30
Glyma04g42550.3                                                       128   8e-30
Glyma04g42790.1                                                       127   1e-29
Glyma06g12210.1                                                       127   1e-29
Glyma05g03440.2                                                       102   6e-22
Glyma05g03440.1                                                       102   7e-22
Glyma17g13990.1                                                       102   8e-22
Glyma04g42550.5                                                        97   2e-20

>Glyma04g42550.2 
          Length = 294

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   D+V + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                + K G     FK++VL++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I +I ++EGL + +   + ++  S+ +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAI 214


>Glyma04g42550.1 
          Length = 364

 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   D+V + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                + K G     FK++VL++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I +I ++EGL + +   + ++  S+ +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAI 214


>Glyma06g11980.1 
          Length = 361

 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 31/228 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP++LD V  H D+   + +L TE   PHLL YGP G+GK + I+A+ R+++G+ 
Sbjct: 40  WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 98

Query: 63  AEKVKVENRTWKVDAG-SRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
               + +N   +++A   R ID                         VV++ I++ A  +
Sbjct: 99  ----QYQNMILELNASDDRGID-------------------------VVRQQIQDFASTQ 129

Query: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
            +    K   K+++L++ D ++++AQ +LRR +EKY+   R  L CN  +++  A++SRC
Sbjct: 130 SLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRC 189

Query: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
              R        + E ++ + K EGL +     A     SN ++R+A+
Sbjct: 190 TRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKAL 237


>Glyma04g42550.4 
          Length = 342

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   D+V + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                + K G     FK++VL++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I +I ++EGL + +   + ++  S+ +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAI 214


>Glyma04g42550.3 
          Length = 342

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   D+V + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                + K G     FK++VL++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I +I ++EGL + +   + ++  S+ +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAI 214


>Glyma04g42790.1 
          Length = 363

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 31/228 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP +LD V  H D+   + +L TE   PHLL YGP G+GK + I+A+ R+++G+ 
Sbjct: 42  WVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGS- 100

Query: 63  AEKVKVENRTWKVDAG-SRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNR 121
               + +N   +++A   R ID                         VV++ I++ A  +
Sbjct: 101 ----QYQNMILELNASDDRGID-------------------------VVRQQIQDFASTQ 131

Query: 122 PIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRC 181
            +    K   K+++L++ D ++++AQ +LRR +EKY+   R  L CN  +++  A++SRC
Sbjct: 132 SLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRC 191

Query: 182 LNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
              R        + E ++ + K EGL +     A +   SN ++R+A+
Sbjct: 192 TRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKAL 239


>Glyma06g12210.1 
          Length = 342

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 37/234 (15%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRPK +  V   D+V + L   +    CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDR--YVVQEIIKEMAKN 120
             K +V                          +E++ SD    DR   VV+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100

Query: 121 RPIDTKGKKG-----FKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTE 175
                + K G     FK++VL++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 101 AVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIE 160

Query: 176 AIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAI 229
            + SRC   R    SEE +   I +I ++EGL + +   + ++  S+ +LRRAI
Sbjct: 161 PLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSFISHGDLRRAI 214


>Glyma05g03440.2 
          Length = 302

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 126/247 (51%), Gaps = 33/247 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP  +  ++ ++D    L+ +  + + P+L+  GP G+GK T I+AL  ++ G  
Sbjct: 14  WVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGP 73

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRP 122
             K  V                          +E++ SD    D  VV+  IK  A+ + 
Sbjct: 74  NCKEAV--------------------------LELNASDDRGID--VVRNKIKMFAQKKV 105

Query: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182
             T G+   K+++L++ D ++  AQ +LRRTME YS   R  L CN+S+++ E I+SRC 
Sbjct: 106 TLTPGRH--KIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCA 163

Query: 183 NIRINAPSEEQIVEVIEFIGKKEGLQ-IPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
            +R +  S+++I+  +  + + E +  +P G  A I   ++ ++R+A+ + +      + 
Sbjct: 164 IVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEA-IIFTADGDMRQALNNLQAT-YSGFQ 221

Query: 242 FTNRQTI 248
           F N+  +
Sbjct: 222 FVNQANV 228


>Glyma05g03440.1 
          Length = 331

 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 126/247 (51%), Gaps = 33/247 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP  +  ++ ++D    L+ +  + + P+L+  GP G+GK T I+AL  ++ G  
Sbjct: 14  WVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGP 73

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRP 122
             K  V                          +E++ SD    D  VV+  IK  A+ + 
Sbjct: 74  NCKEAV--------------------------LELNASDDRGID--VVRNKIKMFAQKKV 105

Query: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182
             T G+   K+++L++ D ++  AQ +LRRTME YS   R  L CN+S+++ E I+SRC 
Sbjct: 106 TLTPGRH--KIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCA 163

Query: 183 NIRINAPSEEQIVEVIEFIGKKEGL-QIPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
            +R +  S+++I+  +  + + E +  +P G  A I   ++ ++R+A+ + +      + 
Sbjct: 164 IVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEA-IIFTADGDMRQALNNLQAT-YSGFQ 221

Query: 242 FTNRQTI 248
           F N+  +
Sbjct: 222 FVNQANV 228


>Glyma17g13990.1 
          Length = 332

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 126/247 (51%), Gaps = 33/247 (13%)

Query: 3   WVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTA 62
           WV+KYRP  +  ++ ++D    L+ +  + + P+L+  GP G+GK T I+AL  ++ G  
Sbjct: 15  WVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGP 74

Query: 63  AEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRP 122
             K  V                          +E++ SD    D  VV+  IK  A+ + 
Sbjct: 75  NCKEAV--------------------------LELNASDDRGID--VVRNKIKMFAQKKV 106

Query: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182
             T G+   K+++L++ D ++  AQ +LRRTME YS   R  L CN+S+++ E I+SRC 
Sbjct: 107 TLTPGRH--KIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCA 164

Query: 183 NIRINAPSEEQIVEVIEFIGKKEGLQ-IPSGFAARIAEKSNRNLRRAILSFETCRVQQYP 241
            +R +  S+++I+  +  + + E +  +P G  A I   ++ ++R+A+ + +      + 
Sbjct: 165 IVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEA-IIFTADGDMRQALNNLQAT-YSGFQ 222

Query: 242 FTNRQTI 248
           F N+  +
Sbjct: 223 FVNQANV 229


>Glyma04g42550.5 
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 37/200 (18%)

Query: 37  LLFYGPSGSGKKTLIMALLRQMFGTAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIE 96
           +LFYGP G+GK T  +A+  Q+FG    K +V                          +E
Sbjct: 1   MLFYGPPGTGKTTTALAIAHQLFGPELYKSRV--------------------------LE 34

Query: 97  MSPSDAGFQDR--YVVQEIIKEMAKNRPIDTKGKKG-----FKVLVLNDVDKLSREAQHS 149
           ++ SD    DR   VV+  IK+ A       + K G     FK++VL++ D ++ +AQ++
Sbjct: 35  LNASD----DRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNA 90

Query: 150 LRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQI 209
           LRRTME YS   R    CN  SR+ E + SRC   R    SEE +   I +I ++EGL +
Sbjct: 91  LRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCL 150

Query: 210 PSGFAARIAEKSNRNLRRAI 229
            +   + ++  S+ +LRRAI
Sbjct: 151 DAEALSTLSSISHGDLRRAI 170