Miyakogusa Predicted Gene

Lj0g3v0102019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102019.1 tr|D7L8X6|D7L8X6_ARALL Transcription initiation
factor IIB-2 OS=Arabidopsis lyrata subsp. lyrata GN=,92.02,0,no
description,Cyclin-like; TRANSCRIPTION INITIATION FACTOR
IIB-RELATED,Transcription factor TFIIB; ,CUFF.5743.1
         (238 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g32370.1                                                       409   e-114
Glyma10g15700.1                                                       407   e-114
Glyma03g29070.1                                                       396   e-110
Glyma19g31830.1                                                       362   e-100
Glyma11g07140.1                                                        92   3e-19
Glyma01g38090.1                                                        91   7e-19
Glyma08g26850.1                                                        88   7e-18
Glyma05g06330.1                                                        77   2e-14
Glyma05g06200.1                                                        64   2e-10

>Glyma02g32370.1 
          Length = 314

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/220 (89%), Positives = 201/220 (91%)

Query: 19  RWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA 78
           RWQNRGSNPDR LI+AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA
Sbjct: 95  RWQNRGSNPDRALIIAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA 154

Query: 79  ACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDF 138
           ACLYIACRQEDKPRTVKEICS+ANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDF
Sbjct: 155 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDF 214

Query: 139 MRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISI 198
           MRRFCSNL MNN            SEEFDIRRSPISI AAVIYIITQLSDDKKPLKDIS+
Sbjct: 215 MRRFCSNLCMNNQAVKAAQEAVHKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISL 274

Query: 199 ATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           ATGVAEGTIRNSYKDLYPHVSKIIP WYAKEEDLKNL SP
Sbjct: 275 ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 314


>Glyma10g15700.1 
          Length = 313

 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/220 (89%), Positives = 200/220 (90%)

Query: 19  RWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA 78
           RWQNRGSNPDR LI AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA
Sbjct: 94  RWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA 153

Query: 79  ACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDF 138
           ACLYIACRQEDKPRTVKEICS+ANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDF
Sbjct: 154 ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDF 213

Query: 139 MRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISI 198
           MRRFCSNL MNN            SEEFDIRRSPISI AAVIYIITQLSDDKKPLKDIS+
Sbjct: 214 MRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISL 273

Query: 199 ATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           ATGVAEGTIRNSYKDLYPHVSKIIP WYAKEEDLKNL SP
Sbjct: 274 ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313


>Glyma03g29070.1 
          Length = 306

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 203/238 (85%), Gaps = 6/238 (2%)

Query: 1   MISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYK 60
           +I+ P             RWQNRG      LI+AFKTIATMSDRLGLVATIKDRANEIYK
Sbjct: 75  VIAKPNGGSGEFLSSSVGRWQNRG------LIVAFKTIATMSDRLGLVATIKDRANEIYK 128

Query: 61  RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 120
           RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGATKKEIGRAKEYIVKQL
Sbjct: 129 RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 188

Query: 121 GLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVI 180
           GLE+GQSVE+GTIHAGDFMRRFCSNLGM N            SEEFDIRRSPISI AAVI
Sbjct: 189 GLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVI 248

Query: 181 YIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           YIITQLSDDKKP KDIS+ATGVAEGTIRNSYKDLYPHVSKIIP+WYAKEEDLKNLSSP
Sbjct: 249 YIITQLSDDKKPPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLSSP 306


>Glyma19g31830.1 
          Length = 282

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/194 (89%), Positives = 179/194 (92%)

Query: 45  LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGA 104
           LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGA
Sbjct: 89  LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 148

Query: 105 TKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSE 164
           TKKEIGRAKEYIVKQLGLE+GQSVEMGTIHAGDFMRRFCSNLGM N            SE
Sbjct: 149 TKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSE 208

Query: 165 EFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPT 224
           EFDIRRSPISI AAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIP+
Sbjct: 209 EFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPS 268

Query: 225 WYAKEEDLKNLSSP 238
           WYAKE+DLKNL SP
Sbjct: 269 WYAKEDDLKNLCSP 282


>Glyma11g07140.1 
          Length = 466

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 34  AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 93
           A+  I  ++  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 139 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 198

Query: 94  VKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXX 153
           ++EI SIA    +KEIG+  + + + L L +  +    ++H    M RFC+ L +N    
Sbjct: 199 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 253

Query: 154 XXXXX--XXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSY 211
                      ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  Y
Sbjct: 254 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 313

Query: 212 KDLYPHVSKIIPTWY 226
           K+L  +   ++P+ Y
Sbjct: 314 KELLENWDDLLPSNY 328


>Glyma01g38090.1 
          Length = 503

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 34  AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 93
           A+  I  ++  LGL   I D A ++++        R R+ ++L  A L  A R+  +PRT
Sbjct: 138 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVESLATAALVQAIREAQEPRT 197

Query: 94  VKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXX 153
           ++EI SIA    +KEIG+  + + + L L +  +    ++H    M RFC+ L +N    
Sbjct: 198 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 252

Query: 154 XXXXX--XXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSY 211
                      ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  Y
Sbjct: 253 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 312

Query: 212 KDLYPHVSKIIPTWY 226
           K+L  +   ++P+ Y
Sbjct: 313 KELLENWDDLLPSNY 327


>Glyma08g26850.1 
          Length = 207

 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 13/150 (8%)

Query: 47  LVATIKDRANEIYKRVEDQKSSRGRNQD-ALLAACLYIACRQEDKPRTVKEICSIANGAT 105
            V +IK+ A E+YK+ + +K  + R    A + ACLY+AC++E  PRTVKEI S+A+GA 
Sbjct: 58  FVWSIKNHAKELYKKAQGRKIFKWRRHSRASMMACLYLACQEEGFPRTVKEIQSVADGAK 117

Query: 106 KKEIGRAKEYIVKQLGL----EKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXX 161
           +K+I +A     K L +    +K Q++++G          FCS  G+ N           
Sbjct: 118 EKQINKAIGVFNKHLQVGKNYDKAQALDIGEC--------FCSEFGLANHVIKAVREVLH 169

Query: 162 XSEEFDIRRSPISITAAVIYIITQLSDDKK 191
            + EF +RR P  I A  I ++ QLS   K
Sbjct: 170 KAHEFYVRRKPSIILATTIDMVDQLSSKNK 199


>Glyma05g06330.1 
          Length = 257

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 19  RWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVED--QKSSRGRNQDAL 76
           R   R    D  L+ A  T+  M++ LGL  +I++ A E+YK+ ED      R R+  A 
Sbjct: 94  RAAKRKLKRDCDLVAALLTMEQMANNLGLARSIQNHAKELYKKAEDRRVFRGRRRHSRAS 153

Query: 77  LAACLYIACRQEDKPRTVKEICSIA------NGATKKEIGRAKEYIVKQLGLEKGQSVEM 130
           + ACLY+ C++E  P T+KEI S++      N    K IG  K++       +K Q++++
Sbjct: 154 MVACLYLVCQEEGFPMTLKEIQSVSGEAKEKNKHINKAIGVFKKHFQVGRNYDKTQALDL 213

Query: 131 GTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYI 182
           G         R C++LG+ N            + E   R  P S+ AA IY+
Sbjct: 214 G--------ERLCTDLGLGNHVIKAVREVLQKALELIERSRPSSVMAATIYM 257


>Glyma05g06200.1 
          Length = 268

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 14/125 (11%)

Query: 28  DRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVED--QKSSRGRNQDALLAACLYIAC 85
           D  L+ A  T+  M++ LGL  +IK+ A E+YK+ ED      R R+  A + ACLY+AC
Sbjct: 121 DCDLVAALLTMEQMANNLGLAWSIKNHAKELYKKAEDRRVFRGRRRHSRASMVACLYLAC 180

Query: 86  RQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSN 145
           ++E  P+  KE     N    K IG  K++       +K Q +++G         R C++
Sbjct: 181 QEEGFPKDSKE----KNKHIYKAIGVFKKHFQVGRNYDKTQVLDIG--------ERLCTH 228

Query: 146 LGMNN 150
           LG++N
Sbjct: 229 LGLDN 233