Miyakogusa Predicted Gene

Lj0g3v0101149.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101149.2 tr|G7I5I4|G7I5I4_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_1g075940 PE=4
SV=1,32.32,2e-18,Rep_fac-A_C,Replication factor A, C-terminal; Nucleic
acid-binding proteins,Nucleic acid-binding, OB,CUFF.5670.2
         (238 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g33700.1                                                        49   4e-06
Glyma01g23480.1                                                        48   9e-06

>Glyma07g33700.1 
          Length = 311

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 15  LLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMP 73
           ++ + +W Y AC +CHR   ++ G   C GC +  +    R+R+++ VS  +D ++F++ 
Sbjct: 145 VMNNHSWCYPACVQCHRKTDIQTGPFTC-GCGKNNDQPVLRYRVEVMVSQNNDSSKFLLW 203

Query: 74  DLIAENLINKSCMDILNEVKDPNA---FEVAPTIEDTLVGRDLLFKV 117
           D     LI ++  D +N VK  +       +P   D L+G  L FKV
Sbjct: 204 DRECAELIGQT-ADEVNRVKIEDGDVDLNASPQAVDRLLGYVLAFKV 249


>Glyma01g23480.1 
          Length = 316

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 15  LLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMP 73
           ++ + +W Y AC +CHR   ++ G   C GC +  +    R+R+++ VS  +D ++F++ 
Sbjct: 146 VVDNHSWCYPACIQCHRKTYIQTGPFTC-GCGKDNDQPVLRYRVEVMVSQNNDSSKFLLW 204

Query: 74  DLIAENLINKSCMDILNEVKDPNA---FEVAPTIEDTLVGRDLLFKV 117
           D     LI ++  D +N VK  +       +P   D L+G  L FKV
Sbjct: 205 DRECAELIGQT-ADEVNRVKIEDGDVDLNASPQALDRLLGYVLAFKV 250