Miyakogusa Predicted Gene

Lj0g3v0101139.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101139.2 tr|G7JIC6|G7JIC6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_4g028320 PE=4
SV=1,28.19,0.000000000009,Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic
acid-bindin,CUFF.5671.2
         (304 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g19090.1                                                        52   8e-07

>Glyma15g19090.1 
          Length = 637

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILF--SGKTKVVP 70
           G+I+ +   A+  ++ +    G VY I   ++ PA+ ++    + + IL   S   ++ P
Sbjct: 239 GEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCP 298

Query: 71  LECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVKIMMMEL 129
            E  SIPR   S      +E + + S  ++DV+G +T+V+P V I  K     +  ++ L
Sbjct: 299 DEDGSIPRQQFSFRPISDIENVDNNS--ILDVIGVVTSVNPSVPILRKNGMETQRRILSL 356

Query: 130 YDENG-SMSFVVLGDCVSVVSDYLSSHSKEK--PLVVVQYAKIKKFEGKNLLHTLIPVST 186
            D +G S+   + G+  +     L         P++ V+  K+  F GK++    I  + 
Sbjct: 357 KDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGS--ISTTQ 414

Query: 187 IHLNQEFEEAKAFRK 201
           + +N +F EA + R+
Sbjct: 415 LFINPDFPEAHSLRE 429