Miyakogusa Predicted Gene

Lj0g3v0101139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101139.1 tr|G7JIC6|G7JIC6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_4g028320 PE=4
SV=1,29.68,5e-18,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; seg,NULL; no description,Nucleic a,CUFF.5671.1
         (345 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        55   8e-08
Glyma15g19090.1                                                        54   2e-07
Glyma05g00370.1                                                        50   5e-06
Glyma05g00370.2                                                        49   6e-06

>Glyma18g33200.1 
          Length = 126

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query: 42  ISLEMVFMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRI 101
           +S+EMV +D +  ++  S+ +    K+     EG  Y I FF V    G YR  +H Y+I
Sbjct: 26  LSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGKWYSIQFFGVAENGGIYRTTHHKYKI 85

Query: 102 LFSGKTKVVPLECESIP 118
           +F   TKV  ++  SIP
Sbjct: 86  VFQYSTKVALVDNASIP 102


>Glyma15g19090.1 
          Length = 637

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 10/201 (4%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILF--SG 105
            +D   G+I+ +   A+  ++ +    G VY I   ++ PA+ ++    + + IL   S 
Sbjct: 233 LLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSS 292

Query: 106 KTKVVPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSP-VRIDVKGSSHVK 164
             ++ P E  SIPR   S      +E + + S  ++DV+G +T+V+P V I  K     +
Sbjct: 293 MVELCPDEDGSIPRQQFSFRPISDIENVDNNS--ILDVIGVVTSVNPSVPILRKNGMETQ 350

Query: 165 IMMMELYDENG-SMSFVVLGDCVSVVSDYLSSHSKEK--PLVVVQYAKIKKFEGKNLLHT 221
             ++ L D +G S+   + G+  +     L         P++ V+  K+  F GK++   
Sbjct: 351 RRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGS- 409

Query: 222 LIPVSTIHLNQEFEEAKAFRK 242
            I  + + +N +F EA + R+
Sbjct: 410 -ISTTQLFINPDFPEAHSLRE 429


>Glyma05g00370.1 
          Length = 708

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKT 107
             DE   +IQA++     RK+ DKFV G VY I    +  A   ++   + Y +  +  +
Sbjct: 217 LTDEDGTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENS 276

Query: 108 KV--VPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKI 165
           +V  V  E   +P    + V   QL    + S+ LVDV+G +  VS      + S +  I
Sbjct: 277 EVEEVVGEASFVPETKFNFVQIDQLGPHVNKSE-LVDVIGVVKNVSSTMSIRRKSDNESI 335

Query: 166 MMMELYDENGSMSFVVL---GDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTL 222
              ++   + +   VV+    +  +   + L     + P+V ++  K+  F+G +L  + 
Sbjct: 336 PKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDKSPVVAIKSLKVGDFQGVSL--ST 393

Query: 223 IPVSTIHLNQEFEEAKAFR 241
           I  S + +N +  EAK  R
Sbjct: 394 IGRSVVLVNPDIPEAKNLR 412


>Glyma05g00370.2 
          Length = 620

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 48  FMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKT 107
             DE   +IQA++     RK+ DKFV G VY I    +  A   ++   + Y +  +  +
Sbjct: 217 LTDEDGTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENS 276

Query: 108 KV--VPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKI 165
           +V  V  E   +P    + V   QL    + S+ LVDV+G +  VS      + S +  I
Sbjct: 277 EVEEVVGEASFVPETKFNFVQIDQLGPHVNKSE-LVDVIGVVKNVSSTMSIRRKSDNESI 335

Query: 166 MMMELYDENGSMSFVVL---GDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTL 222
              ++   + +   VV+    +  +   + L     + P+V ++  K+  F+G +L  + 
Sbjct: 336 PKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDKSPVVAIKSLKVGDFQGVSL--ST 393

Query: 223 IPVSTIHLNQEFEEAKAFR 241
           I  S + +N +  EAK  R
Sbjct: 394 IGRSVVLVNPDIPEAKNLR 412