Miyakogusa Predicted Gene
- Lj0g3v0100959.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0100959.1 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.61,2e-18,RETICULON-RELATED (PLANT),NULL;
RETICULON,Reticulon; seg,NULL; Reticulon,Reticulon,CUFF.5655.1
(460 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g44420.1 427 e-119
Glyma12g33360.1 318 6e-87
Glyma13g37070.1 305 8e-83
Glyma06g44420.2 303 2e-82
Glyma12g13340.1 245 8e-65
Glyma17g08250.1 135 8e-32
Glyma06g26810.1 134 2e-31
Glyma02g36430.1 127 3e-29
Glyma04g11960.1 53 7e-07
Glyma04g11780.1 52 2e-06
>Glyma06g44420.1
Length = 430
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/393 (60%), Positives = 262/393 (66%), Gaps = 17/393 (4%)
Query: 71 LARIGENGIIEPIRISLDLV--PSPTTIKXXXXXXXXXXXXXXXXXXXXXXXXXELLLMS 128
LAR ENG +EPI+ISLD V P P T K ELLL+S
Sbjct: 25 LARKSENGTVEPIQISLDTVTSPPPATAKPSAASPTSSLPIK------------ELLLLS 72
Query: 129 PSPARKSKPRFDDELLEAGSGVRRRCKSRGAQMGLLCSPXXXXXXXXEEKEVGLVVDEAG 188
PS AR+SK RFD+E+ EA GVRRRCKSR A SP EEKE G+ V+E
Sbjct: 73 PSSARRSKARFDEEVPEAA-GVRRRCKSRAAAAAQAASPRSLRRWRREEKE-GVAVEEVV 130
Query: 189 KQRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDRVGQFITDLIMWRDVSKS 248
KQRKRRHSGR RKE+LSLV +EE GDLDRVG I+DLIMW+DVSKS
Sbjct: 131 KQRKRRHSGRHRKERLSLVPFQPPSTSSPTTKADEENRGDLDRVGALISDLIMWKDVSKS 190
Query: 249 AXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXVSQRDQAEK-GYAKLK 307
TKGVNFSIFSA+ +LAI V QR+Q EK +AKLK
Sbjct: 191 TLWFGLGCLCFLSSCFTKGVNFSIFSAISRLAILLLGVSFFSNSVCQRNQVEKRSFAKLK 250
Query: 308 EDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLITIWRLSAIGF 367
EDDIL L LILPA N AISKTRELFSGEP +TLK+APFLLLGAEYG LITIWRL AIGF
Sbjct: 251 EDDILHLAKLILPALNFAISKTRELFSGEPCMTLKVAPFLLLGAEYGHLITIWRLCAIGF 310
Query: 368 FVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVASALIAFWKLSTIKTRIF 427
FVSFSVP+LYSCYS QIN R +CLKLRLLD WSAC HKKIV+AS LIAFW LSTIKTRIF
Sbjct: 311 FVSFSVPRLYSCYSAQINLRVECLKLRLLDTWSACTHKKIVIASVLIAFWNLSTIKTRIF 370
Query: 428 TGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
T FILLVI RY R+ +MQ VEDGEAQ+ EK QK
Sbjct: 371 TAFILLVILRYFRETIMQPVEDGEAQVAEKEQK 403
>Glyma12g33360.1
Length = 395
Score = 318 bits (816), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 183/344 (53%), Positives = 217/344 (63%), Gaps = 22/344 (6%)
Query: 128 SPSPA----RKSKPRFDDELLEAGSGVRRRCKSRGAQMGLLCSPXXXXXXXX----EEKE 179
SPSPA P F D +GVRRRCK+R Q +P EEK+
Sbjct: 37 SPSPAVPRNTSPPPEFPD-----SAGVRRRCKTRAPQTASPRNPRKSRRRSELEIREEKD 91
Query: 180 VGLVVDEAGKQRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDRVGQFITDL 239
+ ++E GK RKRR + R +KEK + EEE GGD DRVGQ ++DL
Sbjct: 92 -SIFLEEVGKPRKRRQTARTKKEKPN-----SAPPSTPSPKSEEENGGDFDRVGQVVSDL 145
Query: 240 IMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXVSQRDQA 299
IMW++ SKS T+G+NFSIFSAL QL I + QR++
Sbjct: 146 IMWKNSSKSTFWFGFGSLCLVSSCFTQGLNFSIFSALSQLGILLSGVSFFSNSICQRNEV 205
Query: 300 E-KGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLIT 358
E K KLKEDDI RL LILPA N A+S+ R LFSGEPS+TLK+ PFLLLGAEYG LIT
Sbjct: 206 EEKREIKLKEDDISRLAKLILPALNFALSRMRALFSGEPSMTLKVVPFLLLGAEYGHLIT 265
Query: 359 IWRLSAIGFFVSFSVPKLYSCYSDQINQRA--KCLKLRLLDRWSACPHKKIVVASALIAF 416
IWRL AIGF VSFSVPKLYSCY+ QINQR + LK LLD WSAC KK V+ASAL+AF
Sbjct: 266 IWRLCAIGFLVSFSVPKLYSCYTAQINQRGMTEGLKSWLLDTWSACTRKKKVMASALMAF 325
Query: 417 WKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
W LS+IKTRIFT FILLV+ RY RQ+V+ Q+EDGEAQ+GEK Q+
Sbjct: 326 WNLSSIKTRIFTVFILLVLCRYLRQHVVLQLEDGEAQVGEKEQQ 369
>Glyma13g37070.1
Length = 390
Score = 305 bits (780), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 181/348 (52%), Positives = 214/348 (61%), Gaps = 24/348 (6%)
Query: 128 SPSPA--RKSKPRFDDELLEAGSGVRRRCKSRGAQMGLLCSPXXXXXXXX----EEKEVG 181
SPSPA R + P + L +GVRRRCK+R Q +P EEK+
Sbjct: 26 SPSPAVPRSTTPPPE---LPDSAGVRRRCKTRAPQTASPRNPRKSRRRSELEIREEKD-S 81
Query: 182 LVVDEAGKQRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDRVGQFITDLIM 241
V+E GK R RR + R +KEK + V EEE GGDLD VGQ ++DLIM
Sbjct: 82 TFVEEVGKPRTRRQTARTKKEKPNSVPPSTPSPKS-----EEENGGDLDHVGQVVSDLIM 136
Query: 242 WRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXVS------- 294
W+D SKS T+G+NFS+FSAL QL I
Sbjct: 137 WKDASKSTFWFGFCSLCLLSSCFTQGLNFSVFSALSQLGILLSGGVMLQALSCVFCDWSL 196
Query: 295 --QRDQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAE 352
+ + EK KL EDDILRL LILPA N AIS+ R LFSGEPS+TLK+ PFLLLGAE
Sbjct: 197 CFRNEVEEKREIKLTEDDILRLAKLILPALNFAISRMRALFSGEPSMTLKVVPFLLLGAE 256
Query: 353 YGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVASA 412
YG LITI RL AIGF VSFSVPKLYS Y+ QINQRA+ LK LLD WSAC HKK V+ASA
Sbjct: 257 YGHLITIRRLCAIGFVVSFSVPKLYSSYTVQINQRAEGLKSWLLDTWSACTHKKKVMASA 316
Query: 413 LIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
L+ FW LS+IKTRIFT FILLV+ RY RQ+V+ Q+EDGEA++GEK Q+
Sbjct: 317 LMTFWNLSSIKTRIFTVFILLVLFRYLRQHVVLQLEDGEAKVGEKEQQ 364
>Glyma06g44420.2
Length = 248
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 167/221 (75%), Gaps = 1/221 (0%)
Query: 241 MWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXVSQRDQAE 300
MW+DVSKS TKGVNFSIFSA+ +LAI V QR+Q E
Sbjct: 1 MWKDVSKSTLWFGLGCLCFLSSCFTKGVNFSIFSAISRLAILLLGVSFFSNSVCQRNQVE 60
Query: 301 K-GYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLITI 359
K +AKLKEDDIL L LILPA N AISKTRELFSGEP +TLK+APFLLLGAEYG LITI
Sbjct: 61 KRSFAKLKEDDILHLAKLILPALNFAISKTRELFSGEPCMTLKVAPFLLLGAEYGHLITI 120
Query: 360 WRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVASALIAFWKL 419
WRL AIGFFVSFSVP+LYSCYS QIN R +CLKLRLLD WSAC HKKIV+AS LIAFW L
Sbjct: 121 WRLCAIGFFVSFSVPRLYSCYSAQINLRVECLKLRLLDTWSACTHKKIVIASVLIAFWNL 180
Query: 420 STIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
STIKTRIFT FILLVI RY R+ +MQ VEDGEAQ+ EK QK
Sbjct: 181 STIKTRIFTAFILLVILRYFRETIMQPVEDGEAQVAEKEQK 221
>Glyma12g13340.1
Length = 252
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 138/235 (58%), Positives = 151/235 (64%), Gaps = 24/235 (10%)
Query: 226 GGDLDRVGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXX 285
DLDRVG ITDLIMW+DVSKS TKGVNFSIFSA+ +LAI
Sbjct: 1 ADDLDRVGVLITDLIMWKDVSKSTLWFVFGCLCFLSSCFTKGVNFSIFSAISRLAILLLG 60
Query: 286 XXXXXXXVSQRDQAEK-GYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLK-- 342
V QR+Q EK +AKLKEDDIL L LILPA N AISKTRELFSGEP +TLK
Sbjct: 61 VSFFSNSVCQRNQVEKRSFAKLKEDDILHLAKLILPALNFAISKTRELFSGEPCMTLKFI 120
Query: 343 -----------LAPFLLLGAEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCL 391
+APFLLLGAEYG LITIWRL IGFFVSF+VPKLYSCYS QINQR L
Sbjct: 121 PLDCILTFLLRVAPFLLLGAEYGHLITIWRLCVIGFFVSFNVPKLYSCYSAQINQRV--L 178
Query: 392 KLRLLDRWSACPHKKIVVASALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQ 446
++ ++ C IAFW LSTIKTRIFT FILLVI RY RQN+MQ
Sbjct: 179 EIEIVGH-MECLQTH-------IAFWNLSTIKTRIFTAFILLVILRYFRQNIMQH 225
>Glyma17g08250.1
Length = 609
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 6/232 (2%)
Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
Q + DLIMWRD+S+SA K +N S+ S + + + +
Sbjct: 352 QSLVDLIMWRDISRSAFIFGIGTFAIVLSSYAKDINLSLISVMSYIGLVYLAVIFLYRSL 411
Query: 294 SQR---DQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
R D + Y L+E++ + + LILP N +SK R +FSG+P T+KLA L +
Sbjct: 412 ICRGVIDVEDTNYV-LREEEAIWVLKLILPYLNEFLSKLRAMFSGDPGTTIKLAVLLFVL 470
Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVA 410
A GS ITIW+++ GFF F+VPK+ S YS Q+ A R D W +C HKK V
Sbjct: 471 ARCGSYITIWKMAKFGFFGVFTVPKICSSYSAQLTAFANFWIRRFRDAWDSCSHKKAVAL 530
Query: 411 SALIAFWKLSTIKTRIFTGFILLVIARYCRQN--VMQQVEDGEAQLGEKGQK 460
W LS++ RI++ F+L V RY +Q+ V +++ + EA E Q+
Sbjct: 531 GIFGLVWNLSSVVARIWSVFVLFVAFRYYQQHYLVREELVENEAGCDETWQE 582
>Glyma06g26810.1
Length = 605
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 112/224 (50%), Gaps = 2/224 (0%)
Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
Q + +LIMWRDVS+SA K +N SI S + +++ +
Sbjct: 351 QSLVELIMWRDVSRSAFVFGFGSFIIVSSSYAKDINLSIISVMSYISLVYLAVIFLYRSL 410
Query: 294 SQRD--QAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGA 351
R E + E+D + + LILP N +SK + LFSG+P T+KLA L + A
Sbjct: 411 ICRGIINVEDSNYVVGEEDAIWMLKLILPYLNEFLSKLKALFSGDPGTTIKLAVLLFVLA 470
Query: 352 EYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVAS 411
GS IT+W+++ GFF F+VPK+ S YS Q+ + R D W +C HKK V
Sbjct: 471 RCGSYITVWKMAKFGFFGVFTVPKICSSYSAQLTEYGNFWIRRFRDAWDSCTHKKAVALG 530
Query: 412 ALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLG 455
W LS++ RI+ F+L RY +Q+ + + E GE + G
Sbjct: 531 IFGLVWNLSSVVARIWAVFVLFAAFRYYQQHYLVRDEWGEDEAG 574
>Glyma02g36430.1
Length = 362
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
Q + DLIMWR+VS+SA K +N S+ S + + + +
Sbjct: 105 QSLVDLIMWREVSRSAFIFGIGTFTIVSSSYAKDINLSLISVMSYIGLVYLAVIFLYRSL 164
Query: 294 SQR---DQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
R D + Y L E++ + + LILP N +SK R +FSG+P T+KLA L +
Sbjct: 165 ICRGVIDVDDTNYV-LGEEEAIWVLRLILPYLNEFLSKLRAMFSGDPGTTIKLAVLLFVL 223
Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVA 410
A GS ITIW+++ GFF F+ PK+ S YS Q+ A R D W +C HKK V
Sbjct: 224 ARCGSSITIWKMAKFGFFGVFTGPKICSSYSAQLTAFANFWIRRFRDAWVSCSHKKAVAL 283
Query: 411 SALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQ 453
W LS++ RI++ F+L V RY +Q+ + V DG +
Sbjct: 284 GIFGLVWNLSSVVARIWSVFVLFVAFRYYQQHYL--VRDGWVE 324
>Glyma04g11960.1
Length = 325
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 222 EEETGGDLDRVGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFS--------IF 273
EEE GG+LD VGQ + DLIMW+D SKS T+G+NF F
Sbjct: 103 EEENGGNLDHVGQVVGDLIMWKDASKSTFWFGFCSLCLLSLCFTQGLNFRSVKKSKFFYF 162
Query: 274 SALCQLAIXXXXXXXXXXXVSQR----DQAEKGYAKLKEDDILRL 314
+ C + + VS EK KL +DDILRL
Sbjct: 163 NFQCFVDLVAIADSLIGCFVSLEFGLSKVEEKREIKLTQDDILRL 207
>Glyma04g11780.1
Length = 222
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 222 EEETGGDLDRVGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNF-SIFSAL 276
EEE GG+LD VGQ ++DLIMW+D SKS T+G+NF S F L
Sbjct: 103 EEENGGNLDHVGQVVSDLIMWKDASKSTFWFGFCSLCLLSSCFTQGLNFRSCFVGL 158