Miyakogusa Predicted Gene

Lj0g3v0096019.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096019.1 tr|B9I1T3|B9I1T3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568802 PE=4
SV=1,48.53,0.0000000003,seg,NULL,
gene.Ljchr0_pseudomol_20120828.path1.gene9457.1
         (71 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g34490.1                                                        51   3e-07

>Glyma13g34490.1 
          Length = 485

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 5/52 (9%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSKG---DPEKPADSDIDNSN 63
           Y+ VICKV+GWDI+++PAIVL+   L SSL GS+    +P+ PA    D++N
Sbjct: 426 YAQVICKVVGWDIDQMPAIVLKD--LDSSLAGSRKLFVEPKNPAAGCTDDTN 475



 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%), Gaps = 2/34 (5%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSK 48
           Y+ VICKV+GWDI++LPAIVL+   L SSLTGS+
Sbjct: 201 YAQVICKVVGWDIDQLPAIVLKD--LDSSLTGSR 232