Miyakogusa Predicted Gene

Lj0g3v0094919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0094919.1 Non Chatacterized Hit- tr|I0YLC7|I0YLC7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,38.93,0.000000000000002,seg,NULL,CUFF.5265.1
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g15250.1                                                       164   7e-41
Glyma06g46960.1                                                       158   4e-39

>Glyma04g15250.1 
          Length = 146

 Score =  164 bits (414), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 83/91 (91%)

Query: 109 LYIAPAPGKMGYLAAAERFLKVMAMVWAGSQVTKLVRAGGALALAPFVDRGLTWFTNKFK 168
            YIAPAP KMGY AA +RFLKVMAMVWAGSQVTKLVRAGGALALAPFVDRGL+WFT+KFK
Sbjct: 56  FYIAPAPAKMGYGAAVKRFLKVMAMVWAGSQVTKLVRAGGALALAPFVDRGLSWFTHKFK 115

Query: 169 FQSQGKAFMTIVGFCCGLALIVFLVITLLWA 199
           FQ+QGKAFM IVG C GLALIVF VITLLWA
Sbjct: 116 FQTQGKAFMAIVGLCLGLALIVFFVITLLWA 146


>Glyma06g46960.1 
          Length = 274

 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 81/90 (90%)

Query: 77  TLKKLRRYGVSGILSYGLLNTAYYLTTFLVVWLYIAPAPGKMGYLAAAERFLKVMAMVWA 136
           TL+KLRRYG+SGILSYGLLNTAY LTTFL VW YIAPAP KMGY AA +RFLKVMAMVWA
Sbjct: 145 TLQKLRRYGISGILSYGLLNTAYCLTTFLFVWFYIAPAPAKMGYGAAVKRFLKVMAMVWA 204

Query: 137 GSQVTKLVRAGGALALAPFVDRGLTWFTNK 166
           GSQ+TKLVRAGGAL L PFVDRGL+WFT+ 
Sbjct: 205 GSQITKLVRAGGALTLTPFVDRGLSWFTHN 234