Miyakogusa Predicted Gene

Lj0g3v0091569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091569.1 Non Chatacterized Hit- tr|D7L0H8|D7L0H8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,56.36,3e-19,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL; coiled-coil,NULL; seg,NULL,CUFF.4990.1
         (183 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g35700.1                                                        97   1e-20
Glyma12g01660.1                                                        96   2e-20

>Glyma09g35700.1 
          Length = 378

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 51  AAAISRFPSNIDAHLR-----------XXXXXXXXXXXXXXXXXXXXXXXXXSNHLXXXX 99
           AAAISRFPSNIDAHLR                                    SNHL    
Sbjct: 56  AAAISRFPSNIDAHLRPIRPLNLQQNPNPNPNLNPAPNPNPNPILNLHQNPNSNHLPPQQ 115

Query: 100 XXXXXXXXXXXXXXXXKMVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACESFSHYN 159
                           K+VRPGN MELQMAYQDAWRVCHPDFKRPFSSLEDACE    Y+
Sbjct: 116 QPPQQQQQQQQ-----KIVRPGNQMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYH 170

Query: 160 LLLMSDLLCSGRIL 173
           ++   +     RIL
Sbjct: 171 VVADYEEEEDDRIL 184


>Glyma12g01660.1 
          Length = 368

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 65/132 (49%), Gaps = 16/132 (12%)

Query: 51  AAAISRFPSNIDAHLRXXXXXXXXXXXXXXXXXXXXXXXX---------XSNHLXXXXXX 101
           AAAISRFPSNIDAHLR                                  SNHL      
Sbjct: 50  AAAISRFPSNIDAHLRPIRPLNLQQNPNPSPNPAPNPNPNPLINLHQNPNSNHLPPPQQP 109

Query: 102 XXXXXXXXXXXXXXKMVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACESFSHYNLL 161
                         K++RPGN MELQMAYQDAWRVCHPDFKRPFSSLEDACE    Y+++
Sbjct: 110 SQQQQQQ-------KIIRPGNQMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVV 162

Query: 162 LMSDLLCSGRIL 173
              +     RIL
Sbjct: 163 ADYEEEEDDRIL 174