Miyakogusa Predicted Gene
- Lj0g3v0091079.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0091079.1 tr|B9I3U2|B9I3U2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_570288 PE=4
SV=1,61.82,0.000000000003,F-box,F-box domain, cyclin-like; A Receptor
for Ubiquitination Targets,F-box domain, cyclin-like; se,CUFF.4947.1
(219 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g17710.1 317 9e-87
Glyma04g37380.2 310 6e-85
Glyma04g37380.1 309 1e-84
>Glyma06g17710.1
Length = 540
Score = 317 bits (811), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 174/198 (87%)
Query: 22 KASTDSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSALSLN 81
KASTD+ + +LN+DLLQNIL RLP+L FASAACVSK+WNS+ +RILSRPKLSSA+SLN
Sbjct: 20 KASTDANTSLSMLNEDLLQNILARLPSLHFASAACVSKSWNSLCSRILSRPKLSSAISLN 79
Query: 82 PSLTDAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTNGIM 141
PSL DAVNEV+HKVL+EPIRP+FAI N+G+GF ++K L L+RK LGFNIPVIV+V NGIM
Sbjct: 80 PSLPDAVNEVVHKVLSEPIRPHFAIANIGTGFNTAKTLCLIRKSLGFNIPVIVTVANGIM 139
Query: 142 GRDALTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKTPQE 201
GRDA+TDEFKEVKWGALFSG E+Y R +NEG+VLTVGYLPGLKVEA+PLRRP KT Q
Sbjct: 140 GRDAVTDEFKEVKWGALFSGFGEESYTRFINEGLVLTVGYLPGLKVEALPLRRPTKTSQA 199
Query: 202 PWIDNFVMDIKEYSASVS 219
W+DNF+ DIKEYSASVS
Sbjct: 200 TWVDNFIKDIKEYSASVS 217
>Glyma04g37380.2
Length = 418
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 149/201 (74%), Positives = 175/201 (87%), Gaps = 1/201 (0%)
Query: 19 TKGKASTDSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSAL 78
TK KASTD+ + +LN+DLLQNIL RLPAL FASAACVSK+WNS+ NRIL+RPKLSSA+
Sbjct: 16 TKVKASTDANTNLSMLNEDLLQNILARLPALHFASAACVSKSWNSLCNRILTRPKLSSAI 75
Query: 79 SLNPSLTDAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTN 138
SLNPSL DAVNEV+HKVL+EPIRP+FAI N+G+GF ++K L L+R+ LG NIPVIV+V +
Sbjct: 76 SLNPSLPDAVNEVVHKVLSEPIRPHFAIANIGTGFSTAKTLCLIRQSLGSNIPVIVTVAS 135
Query: 139 GIMGRDALTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKT 198
GIMGRDA+TDEFKEVKWGALFSG E+Y R +NEG+VLTVGYLPGLKVEA+PLRRP KT
Sbjct: 136 GIMGRDAVTDEFKEVKWGALFSGFGEESYTRFINEGLVLTVGYLPGLKVEAVPLRRPTKT 195
Query: 199 PQEPWIDNFVMDIKEYSASVS 219
Q W+DNF+ DIKEYSASVS
Sbjct: 196 -QAIWVDNFIKDIKEYSASVS 215
>Glyma04g37380.1
Length = 538
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/201 (74%), Positives = 175/201 (87%), Gaps = 1/201 (0%)
Query: 19 TKGKASTDSIMGVGLLNDDLLQNILTRLPALSFASAACVSKTWNSVSNRILSRPKLSSAL 78
TK KASTD+ + +LN+DLLQNIL RLPAL FASAACVSK+WNS+ NRIL+RPKLSSA+
Sbjct: 16 TKVKASTDANTNLSMLNEDLLQNILARLPALHFASAACVSKSWNSLCNRILTRPKLSSAI 75
Query: 79 SLNPSLTDAVNEVLHKVLAEPIRPYFAIVNVGSGFESSKILRLVRKRLGFNIPVIVSVTN 138
SLNPSL DAVNEV+HKVL+EPIRP+FAI N+G+GF ++K L L+R+ LG NIPVIV+V +
Sbjct: 76 SLNPSLPDAVNEVVHKVLSEPIRPHFAIANIGTGFSTAKTLCLIRQSLGSNIPVIVTVAS 135
Query: 139 GIMGRDALTDEFKEVKWGALFSGIDSEAYARNLNEGIVLTVGYLPGLKVEAIPLRRPPKT 198
GIMGRDA+TDEFKEVKWGALFSG E+Y R +NEG+VLTVGYLPGLKVEA+PLRRP KT
Sbjct: 136 GIMGRDAVTDEFKEVKWGALFSGFGEESYTRFINEGLVLTVGYLPGLKVEAVPLRRPTKT 195
Query: 199 PQEPWIDNFVMDIKEYSASVS 219
Q W+DNF+ DIKEYSASVS
Sbjct: 196 -QAIWVDNFIKDIKEYSASVS 215