Miyakogusa Predicted Gene

Lj0g3v0091049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091049.1 Non Chatacterized Hit- tr|K4CU84|K4CU84_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,33.04,1e-18,seg,NULL; Cornifin,Cornifin (SPRR1),CUFF.4956.1
         (237 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma0041s00240.1                                                      54   1e-07

>Glyma0041s00240.1 
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 1  MASISLSTIIFPFFVLTLFSANSHMMVAGARILLESSEPH 40
          MA+  LST+IF F VL L SA+SH MVAGAR LLES+ P 
Sbjct: 1  MATCGLSTVIFSFVVLMLLSASSHTMVAGARNLLESTLPK 40