Miyakogusa Predicted Gene

Lj0g3v0089409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0089409.1 Non Chatacterized Hit- tr|I1M869|I1M869_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8328
PE=,47.79,5e-19,dsRNA-binding domain-like,NULL; dsrm,Double-stranded
RNA-binding; no description,Double-stranded RNA,CUFF.4813.1
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g33830.1                                                       107   4e-24
Glyma02g41350.1                                                       100   7e-22
Glyma14g07600.1                                                        99   2e-21

>Glyma11g33830.1 
          Length = 357

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 18/133 (13%)

Query: 1   MKVGMPTYNTRNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDSRS 60
           +KV  P YNT  +EGL  LF SS+ F GT Y GD AR+KK+AEQLAAR AI SIL  + S
Sbjct: 114 LKVEKPAYNTVQLEGLLPLFVSSMTFQGTTYVGDAARSKKEAEQLAARNAITSILDGATS 173

Query: 61  GTLYEIVKSKSKVFAAVRPDSSQCIEAST-----------VPDLANTGETSLSM------ 103
           G LYE +KSK   F AVR   S+CI AS+           VP  AN  ET +++      
Sbjct: 174 GLLYETIKSKYSTFGAVRSTKSECINASSAVVEHVPSLVAVPVAANGNETKVALIVPSFN 233

Query: 104 -DCRDKEVVPSVE 115
            +C+ +E V SV+
Sbjct: 234 QECQMREHVSSVQ 246


>Glyma02g41350.1 
          Length = 246

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 3/112 (2%)

Query: 6   PTYNT--RNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDSRSG-T 62
           PTY+T    + G+  +F++S+VFNGT+Y GD AR KK+AEQ AA+AAI+SI+GDS SG T
Sbjct: 55  PTYDTVQEQLGGVLRVFKTSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSTSGTT 114

Query: 63  LYEIVKSKSKVFAAVRPDSSQCIEASTVPDLANTGETSLSMDCRDKEVVPSV 114
           L EI+KSKS  + A++      ++ S V    NTG+ S+++  RD  V  SV
Sbjct: 115 LIEIIKSKSTFYDAIKGKGPPLLQPSAVLSTTNTGQISVTLGHRDTGVTASV 166


>Glyma14g07600.1 
          Length = 459

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 3/113 (2%)

Query: 1   MKVGMPTYNT--RNIEGLPHLFQSSVVFNGTNYRGDTARNKKDAEQLAARAAIISILGDS 58
           + V  PTYNT  + + G+  +F +S+VFNGT+Y GD AR KK+AEQ AA+AAI+SI+GDS
Sbjct: 123 LHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDS 182

Query: 59  RSGT-LYEIVKSKSKVFAAVRPDSSQCIEASTVPDLANTGETSLSMDCRDKEV 110
            SGT L EI+KSKS  + A++       + S V    N G+ S+++D +D EV
Sbjct: 183 SSGTVLVEIIKSKSIFYDAIKGKGRSLSQPSAVLSTTNAGQISITLDHKDTEV 235