Miyakogusa Predicted Gene

Lj0g3v0087929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0087929.1 Non Chatacterized Hit- tr|I1QFD0|I1QFD0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.41,3e-17,FAMILY NOT NAMED,NULL; zf-LSD1,Zinc finger,
LSD1-type; LSD1: zinc finger domain, LSD1 subclass,Zinc ,CUFF.4702.1
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g30490.1                                                       161   1e-40
Glyma08g13630.1                                                       161   2e-40
Glyma05g30490.3                                                       161   2e-40
Glyma08g13630.2                                                       161   2e-40
Glyma05g30490.2                                                       159   8e-40
Glyma09g10010.1                                                       150   3e-37
Glyma15g22140.1                                                       145   7e-36
Glyma15g22140.2                                                       145   7e-36
Glyma17g16600.4                                                       136   5e-33
Glyma05g23710.1                                                       136   5e-33
Glyma17g16600.3                                                       135   7e-33
Glyma01g40720.1                                                       132   7e-32
Glyma17g16600.1                                                       128   1e-30
Glyma17g16600.2                                                       117   2e-27
Glyma05g23710.2                                                       116   4e-27
Glyma18g35280.1                                                        62   2e-10
Glyma07g31600.1                                                        60   5e-10

>Glyma05g30490.1 
          Length = 177

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%), Gaps = 2/89 (2%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQ+VCNGCRS+LLYPRGATNVCCALCNTIT+VPPPGM+MSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP--ANQVAHVPCGNCR 87
          SVRCSCCHTVNL P  +NQVAHV CGNCR
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCR 89


>Glyma08g13630.1 
          Length = 177

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%), Gaps = 2/89 (2%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQ+VCNGCRS+LLYPRGATNVCCALCNTIT+VPPPGM+MSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP--ANQVAHVPCGNCR 87
          SVRCSCCHTVNL P  +NQVAHV CGNCR
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCR 89


>Glyma05g30490.3 
          Length = 175

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%), Gaps = 2/89 (2%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQ+VCNGCRS+LLYPRGATNVCCALCNTIT+VPPPGM+MSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP--ANQVAHVPCGNCR 87
          SVRCSCCHTVNL P  +NQVAHV CGNCR
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCR 89


>Glyma08g13630.2 
          Length = 175

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%), Gaps = 2/89 (2%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQ+VCNGCRS+LLYPRGATNVCCALCNTIT+VPPPGM+MSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP--ANQVAHVPCGNCR 87
          SVRCSCCHTVNL P  +NQVAHV CGNCR
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCR 89


>Glyma05g30490.2 
          Length = 147

 Score =  159 bits (401), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%), Gaps = 2/89 (2%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          MQSQ+VCNGCRS+LLYPRGATNVCCALCNTIT+VPPPGM+MSQLYCGGCRTLLMYTRGA 
Sbjct: 1  MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP--ANQVAHVPCGNCR 87
          SVRCSCCHTVNL P  +NQVAHV CGNCR
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCR 89


>Glyma09g10010.1 
          Length = 174

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 80/88 (90%), Gaps = 3/88 (3%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          M+SQLVCNGCRSIL+YPRGATNVCCALCNTIT+VPPPGMDMSQLYCGGC TLLMYTRGA 
Sbjct: 1  MRSQLVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP-ANQVAHVPCGNCR 87
          SVRCSCCHT+NL P +NQV H  C NCR
Sbjct: 61 SVRCSCCHTINLVPESNQVIH--CANCR 86


>Glyma15g22140.1 
          Length = 180

 Score =  145 bits (367), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 79/90 (87%), Gaps = 5/90 (5%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          M SQLVCNGCR+IL+YPRGATNVCCALCNT+T+VPPPGMDMSQLYCGGC TLLMYTRGA 
Sbjct: 1  MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP---ANQVAHVPCGNCR 87
          SVRCSCCHT+NL P   +NQV H  C NCR
Sbjct: 61 SVRCSCCHTINLVPVLESNQVIH--CTNCR 88


>Glyma15g22140.2 
          Length = 176

 Score =  145 bits (367), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 79/90 (87%), Gaps = 5/90 (5%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          M SQLVCNGCR+IL+YPRGATNVCCALCNT+T+VPPPGMDMSQLYCGGC TLLMYTRGA 
Sbjct: 1  MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60

Query: 61 SVRCSCCHTVNLAP---ANQVAHVPCGNCR 87
          SVRCSCCHT+NL P   +NQV H  C NCR
Sbjct: 61 SVRCSCCHTINLVPVLESNQVIH--CTNCR 88


>Glyma17g16600.4 
          Length = 145

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22  VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61  SVRCSCCHTVNLA-PANQVAHVPCGNCR 87
           SV+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 82  SVQCSCCHTVNLALEANQVAHVNCGNCR 109


>Glyma05g23710.1 
          Length = 145

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22  VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61  SVRCSCCHTVNLA-PANQVAHVPCGNCR 87
           SV+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 82  SVQCSCCHTVNLALEANQVAHVNCGNCR 109


>Glyma17g16600.3 
          Length = 150

 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22  VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61  SVRCSCCHTVNLA-PANQVAHVPCGNCR 87
           SV+CSCCHTVNLA  ANQVAHV CGNCR
Sbjct: 82  SVQCSCCHTVNLALEANQVAHVNCGNCR 109


>Glyma01g40720.1 
          Length = 147

 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 2   QSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAAS 61
           QSQLVC+GCR++LLYP GAT+VCCA+CN +T VPPPG +M+QL CGGC T LMY RGA S
Sbjct: 25  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTFLMYIRGATS 84

Query: 62  VRCSCCHTVNLA-PANQVAHVPCGNCR 87
           V+CSCCHTVNLA  AN VAHV CGNC+
Sbjct: 85  VQCSCCHTVNLALEANLVAHVNCGNCK 111


>Glyma17g16600.1 
          Length = 150

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
           +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22  VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61  SVRCSCCHTVNLA-PANQVAHVPCGNCR 87
           SV+CSCCHTVNLA     VAHV CGNCR
Sbjct: 82  SVQCSCCHTVNLALEGIVVAHVNCGNCR 109


>Glyma17g16600.2 
          Length = 106

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 66/73 (90%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61 SVRCSCCHTVNLA 73
          SV+CSCCHTVNLA
Sbjct: 82 SVQCSCCHTVNLA 94


>Glyma05g23710.2 
          Length = 123

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 66/73 (90%)

Query: 1  MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAA 60
          +QSQLVC+GCR++L++P GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY RGA 
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81

Query: 61 SVRCSCCHTVNLA 73
          SV+CSCCHTVNLA
Sbjct: 82 SVQCSCCHTVNLA 94


>Glyma18g35280.1 
          Length = 31

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 29/31 (93%)

Query: 39 MDMSQLYCGGCRTLLMYTRGAASVRCSCCHT 69
          M+MSQLYCGGCRTLLMYTRG  SVRCSCCHT
Sbjct: 1  MEMSQLYCGGCRTLLMYTRGTTSVRCSCCHT 31


>Glyma07g31600.1 
          Length = 128

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 3   SQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAASV 62
           +Q+VC  CR +L YPRGA +V C+ C T+  V      + Q+ CG C  LLMY  GA+ V
Sbjct: 36  AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV-LEADQVGQVKCGSCAVLLMYPYGASQV 94

Query: 63  RCSCCHTVN 71
           RCS C  V 
Sbjct: 95  RCSSCRFVT 103



 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 15/67 (22%)

Query: 35 PPPGMD--------------MSQLYCGGCRTLLMYTRGAASVRCSCCHTVNLA-PANQVA 79
          PPPG                 +Q+ CG CR LL Y RGA  V+CSCC TVN+   A+QV 
Sbjct: 15 PPPGWQPLPAQPPPPPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVG 74

Query: 80 HVPCGNC 86
           V CG+C
Sbjct: 75 QVKCGSC 81