Miyakogusa Predicted Gene

Lj0g3v0086889.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086889.1 tr|G7JD59|G7JD59_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_4g006290 PE=4 SV=1,45.93,4e-19,SUBFAMILY
NOT NAMED,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL; RNI-like,NULL;
seg,NULL; F-box,F-b,CUFF.4623.1
         (217 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g02970.1                                                       184   8e-47
Glyma08g23130.1                                                       143   2e-34
Glyma07g02980.1                                                       138   6e-33

>Glyma07g02970.1 
          Length = 577

 Score =  184 bits (466), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/217 (50%), Positives = 139/217 (64%), Gaps = 12/217 (5%)

Query: 4   DIHLPEECWECVFRFLNHHHYLESVSLVSKQFLSITNRIRSTLAIPDXXXXXXXXXXXXX 63
           ++HLP+ECWE V +FL  H + E +SL+S QFLSITNR+R++L I D             
Sbjct: 6   ELHLPDECWELVLKFLKSHRHFEPLSLLSTQFLSITNRLRTSLTISDPTLPLLPNLFLRF 65

Query: 64  XNLTSLDLTRFR-GDLDALLLQISRYPLRRLTSLDVSHHPTFPANGLRGLAEKMKTLTSL 122
             LTSLDLTR     L AL L ISR  L  L SL++S HP  P+NG R LA+K+ TL SL
Sbjct: 66  PFLTSLDLTRLHHSHLHALFLHISRATLP-LQSLNLSGHPAIPSNGFRILAKKVTTLKSL 124

Query: 123 TCSHMGSLSIADILLITDCSPFLQELDLSFPKEVVHRG--------NNLPLALPKLLRKV 174
           TCSHMGSL  +D++LI  C PFL+ LDLSFP++  +            L LALP LL  V
Sbjct: 125 TCSHMGSLRNSDLILIAQCFPFLEHLDLSFPEDTDNSTFPVSDVGVKALSLALPMLL-SV 183

Query: 175 NLSGESFIINDEELIRVCKNCEFLEELVIFECPLITQ 211
           +LSG +F IND  ++ +CKNC FLE++ IFEC  ITQ
Sbjct: 184 DLSG-NFFINDASILSLCKNCNFLEQVTIFECHFITQ 219


>Glyma08g23130.1 
          Length = 559

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 125/208 (60%), Gaps = 4/208 (1%)

Query: 6   HLPEECWECVFRFLNHHHYLESVSLVSKQFLSITNRIRSTLAIPDXXXXXXXXXXXXXXN 65
           + PEECWE VFRF+ H  +LES+SLV KQFLSITNR++ +L I D               
Sbjct: 5   NFPEECWELVFRFIGHGRHLESLSLVCKQFLSITNRLQFSLTIHDPTIPVLPRLLLRFPR 64

Query: 66  LTSLDLTRFRGDLDALLLQISRYPLRRLTSLDVSHHPTFPANGLRGLAEKMKTLTSLTCS 125
           L  LDL+      + LL QIS+  L  L  L++S+  T P +GLR L  KMK L  L CS
Sbjct: 65  LRILDLSHLNSHHEGLLRQISQSGL-ELDLLNLSNQRTLPVDGLRELGSKMKNLRVLICS 123

Query: 126 HMGSLSIADILLITDCSPFLQELDLSFP--KEVVHRGNNLPLALPKLLRKVNLSGESFII 183
           ++GSL  + ++++  C PFL+ELD+SFP   +    G     ++ + LRK+N+SG +++I
Sbjct: 124 NIGSLRDSHLVVMAYCFPFLEELDISFPLDSQASDFGVLRLSSMLENLRKINISG-NYLI 182

Query: 184 NDEELIRVCKNCEFLEELVIFECPLITQ 211
            D+ L  +C+NC  L+E+  F C  ITQ
Sbjct: 183 TDKSLFSLCQNCLSLQEISFFTCFKITQ 210


>Glyma07g02980.1 
          Length = 509

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 121/207 (58%), Gaps = 4/207 (1%)

Query: 7   LPEECWECVFRFLNHHHYLESVSLVSKQFLSITNRIRSTLAIPDXXXXXXXXXXXXXXNL 66
           LPEECWE VFRF+ H  +LES+SLV KQFLSITNR++ +L I D               L
Sbjct: 6   LPEECWELVFRFIGHGRHLESLSLVCKQFLSITNRLQFSLTIYDPTIPLLPRLLLRFPRL 65

Query: 67  TSLDLTRFRGDLDALLLQISRYPLRRLTSLDVSHHPTFPANGLRGLAEKMKTLTSLTCSH 126
             LD +   G  +ALL QIS+  L       +S+  T   +GLR L   MK L  L CS+
Sbjct: 66  RILDFSHLNGHHEALLHQISQSRLDLDLLN-LSNQKTLSVDGLRELGSNMKNLRVLICSN 124

Query: 127 MGSLSIADILLITDCSPFLQELDLSFP--KEVVHRGNNLPLALPKLLRKVNLSGESFIIN 184
           +GSL  + +++I  C PFL+ELD+SFP   +    G     ++ + LRK+N+SG +++I 
Sbjct: 125 IGSLRDSHLVVIAYCFPFLEELDISFPLDSQASDFGVLRLSSMLENLRKINISG-NYLIT 183

Query: 185 DEELIRVCKNCEFLEELVIFECPLITQ 211
           D+ L  +C+NC  LEE+  F C  ITQ
Sbjct: 184 DKSLFSLCQNCLSLEEISFFTCYKITQ 210