Miyakogusa Predicted Gene
- Lj0g3v0085339.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0085339.1 tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl
transferase, Ribonuclease H fold OS=Medicago truncatula
GN=Mt,41.05,5e-19,UBN2_3,NULL; seg,NULL,CUFF.4496.1
(210 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g39450.2 121 7e-28
Glyma18g38660.1 105 3e-23
Glyma04g13170.1 102 2e-22
Glyma18g08460.1 100 1e-21
Glyma16g29090.1 98 8e-21
Glyma11g18250.1 91 1e-18
Glyma01g41280.1 84 1e-16
Glyma15g23280.1 74 1e-13
Glyma05g05360.1 68 7e-12
Glyma16g09200.1 64 1e-10
Glyma04g30660.1 61 7e-10
Glyma09g00270.1 60 2e-09
Glyma11g13250.1 58 7e-09
Glyma01g16600.1 53 2e-07
Glyma03g27000.1 51 1e-06
>Glyma20g39450.2
Length = 2005
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
MVVSWI+ S++ +I QS++WMD A IW DLK R+SQ D+LR++DLQ+ S+ KQG L
Sbjct: 374 MVVSWIVHSVATSI--RQSILWMDKAEEIWRDLKSRYSQGDLLRISDLQQEASTMKQGTL 431
Query: 62 TVTDYFTQLRTLWDELDIFRPLPACVCAFKCTCSA 96
TVT+YFT LR +WDE++ FRP P C C +C+C+A
Sbjct: 432 TVTEYFTCLRVIWDEIENFRPDPICSCNIRCSCNA 466
>Glyma18g38660.1
Length = 1634
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 1 MMVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGE 60
M++ SWIL S+ P+I S+S+++MD A +W DLK+RFSQ D++RV+++Q+ I + QG
Sbjct: 86 MLIHSWILNSVEPSI--SRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGT 143
Query: 61 LTVTDYFTQLRTLWDELDIFRPLPACVCAFKCTCSA 96
+VT +++ L+ LW+EL+I+ P+P C C +C+C A
Sbjct: 144 RSVTTFYSDLKALWEELEIYMPIPNCTCHHRCSCDA 179
>Glyma04g13170.1
Length = 284
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
MVVSW++ ++ +I+QS ++WMD A IW DLK R+SQ D+LR+++LQ ++S KQG++
Sbjct: 80 MVVSWLVHLVATSIHQS--ILWMDNAIDIWKDLKARYSQGDLLRISNLQHKLASIKQGDM 137
Query: 62 TVTDYFTQLRTLWDELDIFRPLPAC 86
+TDYFT+L T+WDEL+ ++P P C
Sbjct: 138 NITDYFTKLGTIWDELESYQPNPMC 162
>Glyma18g08460.1
Length = 263
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
MVVSW++ +S +I S++WMD+ IW DLK R+S D+LR++ LQ SS KQG+L
Sbjct: 37 MVVSWLVHFVSSSI--RLSILWMDSVEEIWCDLKSRYSHGDLLRISSLQLEASSIKQGDL 94
Query: 62 TVTDYFTQLRTLWDELDIFRPLPACVCAFKCTCSATS 98
VTDYFTQLR +WDEL+ F+P CVC K C +S
Sbjct: 95 FVTDYFTQLRIIWDELENFQPDLICVCTVKYVCKVSS 131
>Glyma16g29090.1
Length = 518
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
+V+SW+ RS+S I ++S++W D A +W L +RFSQ D+ RVAD+QE ++ +QG L
Sbjct: 414 LVLSWLQRSISEEI--AKSLLWCDRASLVWKSLANRFSQGDIFRVADIQEEVARLQQGTL 471
Query: 62 TVTDYFTQLRTLWDELDIFRPLPACVCAFKCTCSATSSHAMYK 104
++ YFT+L T W+E++ F P+ C CA C+C A + +K
Sbjct: 472 DISSYFTKLMTPWEEIENFCPIRDCTCAIPCSCGAATDLRKFK 514
>Glyma11g18250.1
Length = 457
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 1 MMVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGE 60
+MVV+WI +SLSP I +QS I++D A +W++LK+RF++ + ++DL + I KQ E
Sbjct: 171 IMVVTWITQSLSPQI--AQSTIYIDNAKKLWDELKERFTKGNYFIISDLLQEIHFIKQRE 228
Query: 61 LTVTDYFTQLRTLWDELDIFRPLPACVCAFKCT 93
+VTD+FT+L+ LWDELD+ P C C K T
Sbjct: 229 RSVTDFFTELKILWDELDMVSPTQDCSCTVKYT 261
>Glyma01g41280.1
Length = 831
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 19 QSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGELTVTDYFTQLRTLWDELD 78
Q+++WM+ A IWN LK R+ Q D+ R++DLQE + KQ + T+T YFT+L+ L ELD
Sbjct: 40 QTIMWMENALNIWNTLKKRYYQGDVFRISDLQEELYLLKQRDATITSYFTKLKGLIQELD 99
Query: 79 IFRPLPACVCAFKC 92
FRP+P+ C C
Sbjct: 100 NFRPIPSYTCVVVC 113
>Glyma15g23280.1
Length = 193
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%)
Query: 21 VIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGELTVTDYFTQLRTLWDELDIF 80
VI++D A IWNDLK+ FS ++L + LQE + KQG T+ +YFT+L+TL DELD F
Sbjct: 85 VIYLDCAIDIWNDLKECFSHGNLLHIDALQEEVYGLKQGIQTMIEYFTKLKTLCDELDHF 144
Query: 81 RPLPACVCAFK 91
P C C K
Sbjct: 145 LPFVPCSCFTK 155
>Glyma05g05360.1
Length = 107
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQE-DMLRVADLQEMISSFKQGE 60
MVVSW++ S+ +I S ++WMD A IW DLK R SQ+ D+LRV+D Q SS +QG+
Sbjct: 37 MVVSWLVHSVFISIRHS--ILWMDRADEIWKDLKSRHSQQGDLLRVSDFQFEASSVQQGK 94
Query: 61 LTVTDYFTQLRTL 73
L V +YFT+LR +
Sbjct: 95 LIVIEYFTKLRVV 107
>Glyma16g09200.1
Length = 240
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 26 TAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGELTVTDYFTQLRTLWDELDIFRPLPA 85
T +W DLK+RFS + + ++ I S QG L +T Y + L+ LWDEL ++ LP
Sbjct: 71 TIIEVWADLKERFSYNNAPIIFQIERDIVSLNQGTLPMTAYCSNLKGLWDELLSYKDLPI 130
Query: 86 CVCAFKCTCSATSSHAMYKSLRGSVLSLWLYSNNQKSTTTLQIRFQLCLPHPQFRKSHHI 145
C C +S + + RG V+ + N+ S + ++ L P P K H +
Sbjct: 131 CTC-------GSSKKSEEQGQRGEVMQFLVDLND--SYHAIHVQILLIQPLPTIGKIHSM 181
Query: 146 LVTNPXXXXXXXAFGYLIVELLIILAHLFPILSPFIKLSQYMFS 189
++ G I+A+ I I +S YM S
Sbjct: 182 ILQEEKQYTQRTNKGSNSSNESYIVANAMEITIQLIDVSIYMAS 225
>Glyma04g30660.1
Length = 119
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 15/90 (16%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
++ SWI+ S+SP++ Q ++ ++ + + +L++RFS+ D++ +QG L
Sbjct: 4 LIHSWIVNSISPSVAQ---IVHVELSTVVLKNLRERFSRGDLV------------EQGNL 48
Query: 62 TVTDYFTQLRTLWDELDIFRPLPACVCAFK 91
+VTD FT+L W+EL+ +RP+ C C K
Sbjct: 49 SVTDIFTELTVYWEELENYRPVVDCNCDLK 78
>Glyma09g00270.1
Length = 791
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 20 SVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGELTVTDYFTQLRTLWDELDI 79
S++ +T IW DLK RFS+++ R+ L+ + S +QG V Y+T+L+++W+EL
Sbjct: 70 SILVANTTKEIWEDLKTRFSRKNDPRIFQLRRQLMSLQQGSDDVNTYYTKLKSVWEELSG 129
Query: 80 FRPLPACVCA 89
++P C C
Sbjct: 130 YKPTFQCKCG 139
>Glyma11g13250.1
Length = 789
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
+VVSW+ SL+ I Q+ ++WM+TA IWN LK R+ Q D+ R++DLQE I KQ L
Sbjct: 84 LVVSWLHHSLNLDILQT--IMWMETALDIWNTLKKRYYQGDVFRISDLQEEIYLLKQAML 141
Query: 62 TVTD 65
+ +
Sbjct: 142 LMAE 145
>Glyma01g16600.1
Length = 2962
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 2 MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQ-EDMLRVADLQEMISSFKQGE 60
M+++W+ S+ P I S + +++ +A IW ++ +S+ +D ++ D++ KQG
Sbjct: 76 MIMAWLWNSMVPEI--SDTCMFLKSAKEIWEAVEQTYSKAKDAAQIYDVKVKTLGAKQGN 133
Query: 61 LTVTDYFTQLRTLWDELDIFRPLPA 85
+VT+Y QL++LW ELD +R + A
Sbjct: 134 KSVTEYANQLKSLWMELDHYRVIKA 158
>Glyma03g27000.1
Length = 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 59 GELTVTDYFTQLRTLWDELDIFRPLPACVCAFKCT 93
E +VT++FT+L+ LWDELD+ P P C C KCT
Sbjct: 69 AERSVTNFFTELKILWDELDMLSPTPDCSCTIKCT 103