Miyakogusa Predicted Gene

Lj0g3v0084479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084479.1 tr|A9TMH9|A9TMH9_PHYPA ATP-binding cassette
transporter, subfamily A, member 6, group ATH protein
Pp,49.51,3e-19,seg,NULL; ABC TRANSPORTER,NULL; ATP-BINDING CASSETTE
TRANSPORTER SUBFAMILY A (ABCA),ABC transporter ,CUFF.4437.1
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g34130.1                                                        81   2e-16
Glyma05g01230.1                                                        77   5e-15
Glyma17g10670.1                                                        64   4e-11
Glyma06g20370.1                                                        48   2e-06

>Glyma04g34130.1 
          Length = 949

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 3  NPPPAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQ 62
          N    PASF TQANALLRKNLTFQKRNVKTN+                    + Q DK +
Sbjct: 5  NTANEPASFWTQANALLRKNLTFQKRNVKTNVGLILSPFILCLLLVLLQRLLEYQLDKAE 64

Query: 63 YKCGCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
           KCGCVC   + +    E+ CG ++SD DQF  C
Sbjct: 65 NKCGCVCVRRQGDTCLEEE-CGIEHSDLDQFATC 97


>Glyma05g01230.1 
          Length = 909

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          PAPASF TQANALLRKNLTFQKRNVKTN++                   D Q     +KC
Sbjct: 4  PAPASFWTQANALLRKNLTFQKRNVKTNVQLVLFPVFLCLLLFALQRFIDTQIGGSAFKC 63

Query: 66 GCVCPNGKT----NCPSSEKLCGAQY 87
          GCVC N  T    +CP S+KL  A +
Sbjct: 64 GCVCANNTTREHSHCPDSQKLPSAPF 89


>Glyma17g10670.1 
          Length = 894

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 41/91 (45%), Gaps = 21/91 (23%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKC 65
          P PASF TQANALLRKNLTF KRNVKTN +                   D QF       
Sbjct: 4  PVPASFWTQANALLRKNLTFHKRNVKTNAQLVLFPLILFLLLFALQRLIDTQF------- 56

Query: 66 GCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
                        EK+CG  YSD+ Q  FC
Sbjct: 57 --------------EKVCGIHYSDSIQAAFC 73


>Glyma06g20370.1 
          Length = 888

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 25 FQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKCGCVCPNGKTNCPSSEKLCG 84
          FQKRNVKTN+R                   + Q DK + KCGCVC   + +    E+ CG
Sbjct: 1  FQKRNVKTNVRLIMSPFILCLLLVLLQSLVENQLDKAENKCGCVCVRRQGDTCLEEE-CG 59

Query: 85 AQYSDADQ 92
           ++SD DQ
Sbjct: 60 VEHSDLDQ 67