Miyakogusa Predicted Gene

Lj0g3v0083899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083899.1 tr|A9TB49|A9TB49_PHYPA Histone transcription
regulator HIRA OS=Physcomitrella patens subsp. patens
G,51.14,0.000000000000003, ,CUFF.4400.1
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g30890.1                                                       127   3e-30
Glyma13g39430.1                                                       127   4e-30
Glyma11g19140.1                                                        70   4e-13

>Glyma12g30890.1 
          Length = 999

 Score =  127 bits (319), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           VKFNHSMFRRN++NAQEVK V +G   G SKTG KE QPYN+IAIGSQDRTIT+WTT+SP
Sbjct: 267 VKFNHSMFRRNLTNAQEVKPVPVGWTNGASKTGSKEPQPYNVIAIGSQDRTITVWTTASP 326

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHFFTQ+
Sbjct: 327 RPLFVAKHFFTQS 339


>Glyma13g39430.1 
          Length = 1004

 Score =  127 bits (318), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           VKFNHSMFRRN++NAQEVKSV +G   G SKTG KE QPYN+IAIGSQDRTIT+WTT+SP
Sbjct: 267 VKFNHSMFRRNLTNAQEVKSVPVGWTNGASKTGSKEPQPYNVIAIGSQDRTITVWTTASP 326

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHF TQ+
Sbjct: 327 RPLFVAKHFCTQS 339


>Glyma11g19140.1 
          Length = 929

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 37/46 (80%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIG 57
           VKFN+SMFRRN  NAQEVKSV +G   G SKTG KE QPYN+IAIG
Sbjct: 251 VKFNNSMFRRNFYNAQEVKSVDVGWANGASKTGSKEPQPYNVIAIG 296