Miyakogusa Predicted Gene

Lj0g3v0083669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083669.1 Non Chatacterized Hit- tr|G7IGQ6|G7IGQ6_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,26.24,0.0000000002,RNA-binding domain, RBD,NULL; seg,NULL;
no description,Nucleotide-binding, alpha-beta plait;
RRM_1,R,CUFF.4384.1
         (327 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g06720.1                                                        59   9e-09
Glyma08g32320.1                                                        51   1e-06
Glyma19g28610.1                                                        51   2e-06
Glyma16g17690.1                                                        50   4e-06
Glyma04g24320.1                                                        49   7e-06

>Glyma19g06720.1 
          Length = 3023

 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%)

Query: 213 NEEDCKLLLQQIAGELGDMFESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSN 272
           +EE  + ++Q        +F SLE   P   P   +VW+++W  PI  W +D F K T+ 
Sbjct: 501 SEEKAQHIIQTEKNNGSSLFYSLERWRPGCRPQNRVVWLQVWGFPIEMWGADHFRKATAL 560

Query: 273 IGSYVCMDDPTCKEERFDYARILLLSSEPGNTLRMMN 309
           IG  + +DD T    R D ARIL+ +  P +  + +N
Sbjct: 561 IGDVIELDDDTDNRRRLDRARILVRTPLPPSISKEIN 597


>Glyma08g32320.1 
          Length = 3688

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 213  NEEDCKLLLQQIAGELGDMFESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSN 272
             +E  + + ++I  E   +F SLE   P   P   L W+  W +P+  W+     ++ S 
Sbjct: 1813 TDEMAECMAKEIT-EAEALFYSLEKWHPSLRPGNRLTWVHCWGIPLEAWDKKNIQRIVSV 1871

Query: 273  IGSYVCMDDPTCKEERFDYARILLLSS 299
            +G  V +DD T +  R D AR+LL +S
Sbjct: 1872 LGDMVDIDDDTEESRRMDRARVLLRTS 1898


>Glyma19g28610.1 
          Length = 429

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 232 FESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDY 291
           F SLE  +P   P   LVW + W +P+  W+ +   K+ + IG  V +DD   +  R D 
Sbjct: 298 FRSLERWNPTLRPGYKLVWAQCWGIPLEVWDMENIRKIVAAIGDLVEVDDDVEENRRMDR 357

Query: 292 ARILL 296
           ARIL+
Sbjct: 358 ARILI 362


>Glyma16g17690.1 
          Length = 3826

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 189  LEGKGFRGVQVR-PFGAKEKISSFQNEEDC-KLLLQQIAGELGDMFESLEPMDPLKVPTG 246
            +E +G  G++++  +   +KI  +  + D    L+       G  F SL+   P+  P+ 
Sbjct: 2162 MEVQGAFGLELKTAYWGDDKIIIYDMDGDTTNQLIHDEQQHGGTPFYSLQRWTPMMEPSH 2221

Query: 247  YLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPTCKEERFDYARILL 296
             L W+ +W VP+  W+++ F +  S  G  V +D  T +  R D AR+L+
Sbjct: 2222 RLTWVCIWGVPLTAWDAENFARFVSAYGDLVELDAMTEERSRVDIARVLI 2271


>Glyma04g24320.1 
          Length = 502

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 168 LSKLAVAVLKDLERSSIIQRQLEGKGFRGVQVRP--FGAKEKISSFQNEEDCKLLLQQIA 225
           L K+ V  LK++     ++ +++G    G  V+P  +G    I    +++    + QQ  
Sbjct: 314 LDKVWVGRLKNIGMFERVEEEMQG--MFGADVKPAYWGEDMVILHDMDDDTAYNIKQQEL 371

Query: 226 GELGDMFESLEPMDPLKVPTGYLVWIKLWKVPIGFWNSDFFTKVTSNIGSYVCMDDPT 283
           G  G  F S++   P   P+  L W+ +W VP+  W+++ F  +    G  V +D  T
Sbjct: 372 GNGGTPFSSIQRWTPELTPSYRLTWLLIWGVPLQAWDTEHFATIVGTCGDLVELDAAT 429