Miyakogusa Predicted Gene

Lj0g3v0081359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081359.1 Non Chatacterized Hit- tr|Q9LHP2|Q9LHP2_ARATH
Putative serine/arginine-rich protein OS=Arabidopsis
t,60.31,2e-18,seg,NULL; SERINE/ARGININE RICH SPLICING
FACTOR,NULL,CUFF.4434.1
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g36670.1                                                        58   4e-09
Glyma02g38540.1                                                        57   5e-09
Glyma02g38540.2                                                        57   8e-09
Glyma09g15820.2                                                        53   1e-07
Glyma09g15820.1                                                        53   1e-07

>Glyma14g36670.1 
          Length = 249

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDGQ+LLGRELTVVFAEENRKKPTEM
Sbjct: 102 MDGQVLLGRELTVVFAEENRKKPTEM 127


>Glyma02g38540.1 
          Length = 253

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDGQ+LLGRELTVVFAEENRKKPTEM
Sbjct: 102 MDGQVLLGRELTVVFAEENRKKPTEM 127


>Glyma02g38540.2 
          Length = 192

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDGQ+LLGRELTVVFAEENRKKPTEM
Sbjct: 102 MDGQVLLGRELTVVFAEENRKKPTEM 127


>Glyma09g15820.2 
          Length = 205

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG+ILLGRE+TVVFAEENRKKP EM
Sbjct: 101 MDGRILLGREITVVFAEENRKKPAEM 126


>Glyma09g15820.1 
          Length = 205

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG+ILLGRE+TVVFAEENRKKP EM
Sbjct: 101 MDGRILLGREITVVFAEENRKKPAEM 126