Miyakogusa Predicted Gene

Lj0g3v0079889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079889.1 Non Chatacterized Hit- tr|H3ATW0|H3ATW0_LATCH
Uncharacterized protein (Fragment) OS=Latimeria
chalum,28.69,0.000000000000001,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN,NULL;
seg,NULL,CUFF.4101.1
         (401 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14590.1                                                       498   e-141
Glyma04g40220.1                                                       443   e-124
Glyma18g45010.1                                                       354   1e-97
Glyma01g32170.1                                                        70   4e-12
Glyma20g11030.1                                                        67   4e-11
Glyma09g40790.1                                                        65   2e-10

>Glyma06g14590.1 
          Length = 473

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/392 (66%), Positives = 300/392 (76%), Gaps = 28/392 (7%)

Query: 34  VNWFGVSLPFRSPVSFVIDYWNSSSDSAEPVVVIPNPRPRSRIQSDXXXXXXXX------ 87
           V WFG+S PFRSP+S V+DY  +  DSAEPV++IP  RPR +  ++              
Sbjct: 29  VTWFGMSFPFRSPLSLVMDY-CAREDSAEPVIIIPRTRPRFQAHAESASASSSDSDENAC 87

Query: 88  --XAVEVAISIVGRGDQ----LGTSSSENQVGELGCEEEIMSGERVRVAMSAEDRRAFAA 141
              A EVAI I+G G+Q      +SSS  + GE GCEE ++    +   +S+E RR  A 
Sbjct: 88  NGAAEEVAIRIIGAGEQESGSSPSSSSRGRGGEPGCEEAVVGRSGM---LSSEARRRMAE 144

Query: 142 DNVPLVALPNAISGIPRDSSS------------PYGRLDVQQIAKWSEQILPFALLLLIV 189
           + VPLV+L + I G+   SSS             Y R D+QQ+AKW EQILPF+LLLLIV
Sbjct: 145 ERVPLVSLDDGIGGVRESSSSSSSSSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIV 204

Query: 190 FVRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAFAFMFYVMCIYWWHC 249
           F+RQH QGFFVTIC+SAVMFKSNEIVKKQTALKGDRKVSVLL I+FAF+ +V+ IYWW+ 
Sbjct: 205 FIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFVLHVISIYWWYQ 264

Query: 250 NDDLLSPLAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGHNFRRQA 309
           NDDLL PLAM+PPK  PPFWHTIFI+LVNDTLVRQA MAFKCLLLIYYK+ RGHNFRRQ 
Sbjct: 265 NDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQG 324

Query: 310 QMLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFS 369
           QMLTL+EYTLLLYRALLPTPVWYRFFLNK+YGSLFSSLTTGLYLTFKLTSVVEKV+CF S
Sbjct: 325 QMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVS 384

Query: 370 ALKALSKHEVHYGAYATMEQVNAAGNLCAICQ 401
           ALKALSK EVHYG YAT EQVNAAG+LCAICQ
Sbjct: 385 ALKALSKKEVHYGVYATTEQVNAAGDLCAICQ 416


>Glyma04g40220.1 
          Length = 400

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/271 (80%), Positives = 238/271 (87%), Gaps = 6/271 (2%)

Query: 136 RRAFAADNVPLVALPNAISGIPRDSSS-----PYGRLDVQQIAKWSEQILPFALLLLIVF 190
           RR  A + VPLV+L + I G  RDSSS      Y R D+QQ+AKW EQILPF+LLLLIVF
Sbjct: 74  RRRMAEERVPLVSLDDGIVG-ARDSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVF 132

Query: 191 VRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAFAFMFYVMCIYWWHCN 250
           +RQH QGFFVTIC+SAVMFKSNEIVKKQTALKGDRKVSVLL I+FAFM +V+ IYWW+ N
Sbjct: 133 IRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVISIYWWYRN 192

Query: 251 DDLLSPLAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQ 310
           DDLL PLAM+PPK  PPFWHTIFI+LVNDTLVRQA MAFKCLLLIYYK+ RGHNFRRQ Q
Sbjct: 193 DDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQ 252

Query: 311 MLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSA 370
           MLTLVEYTLLLYRALLPTPVWYRFFLNK+YGSLFSSLTTGLYLTFKLTSVVEKV+CF SA
Sbjct: 253 MLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSA 312

Query: 371 LKALSKHEVHYGAYATMEQVNAAGNLCAICQ 401
           LKALSK EVHYG +AT EQVNAAG++CAICQ
Sbjct: 313 LKALSKKEVHYGVHATTEQVNAAGDMCAICQ 343


>Glyma18g45010.1 
          Length = 440

 Score =  354 bits (908), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/244 (72%), Positives = 213/244 (87%), Gaps = 2/244 (0%)

Query: 158 RDSSSPYGRLDVQQIAKWSEQILPFALLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKK 217
           RDSS  Y R D+Q  A+W EQ+LPF+LLLL+VF+RQH QGFFVTI ++AV+FKSN+I++K
Sbjct: 142 RDSS--YQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRK 199

Query: 218 QTALKGDRKVSVLLSIAFAFMFYVMCIYWWHCNDDLLSPLAMVPPKATPPFWHTIFIVLV 277
           QTALKG+RK+ VL+ I+  F  +V+ +YWW+ NDDL+ PL M+PPK  PPFWH IFI++V
Sbjct: 200 QTALKGERKMLVLVGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMV 259

Query: 278 NDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLN 337
           NDTLVRQA M FKC+LL+YYK+SRG N+R+Q QMLTLVEY LLLYRALLPTPVWYRFFLN
Sbjct: 260 NDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLN 319

Query: 338 KEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSALKALSKHEVHYGAYATMEQVNAAGNLC 397
           KEYGSLFSSL TGLYLTFKLTSVVEKV+ FF+A+KALS+ E+HYGAYAT EQVNAAG+LC
Sbjct: 320 KEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLC 379

Query: 398 AICQ 401
           AICQ
Sbjct: 380 AICQ 383


>Glyma01g32170.1 
          Length = 215

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 80/146 (54%), Gaps = 27/146 (18%)

Query: 136 RRAFAADNVPLVALPN-AISGIPRDSSSPYGRLDVQQIAKWSEQILPFALLLLIVFVRQH 194
           R   A + V LV+L + A       SSS Y R D+QQ+AKW E IL F+LLLLIVF+ QH
Sbjct: 57  RWRMAEERVSLVSLDDGARDSSSSSSSSTYQRYDIQQVAKWIEHILSFSLLLLIVFICQH 116

Query: 195 WQ-GFFVTI---CVSAV----------------MFKSNEIVKKQ------TALKGDRKVS 228
            Q  FF  I   C+  V                ++ S ++  K         L GDRKVS
Sbjct: 117 LQDNFFFDITFLCLPLVFGGMPRFSHGMFLCHNLYISYDVQVKWNLYINCNILLGDRKVS 176

Query: 229 VLLSIAFAFMFYVMCIYWWHCNDDLL 254
           VLL I+FAFM +V+ IYWW+ NDDLL
Sbjct: 177 VLLGISFAFMLHVISIYWWYRNDDLL 202


>Glyma20g11030.1 
          Length = 73

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%)

Query: 182 FALLLLIVFVRQHWQGFFVTICVSAVMFKSNEIVKKQTALKGDRKVSVLLSIAFAFMFYV 241
           F  ++ I FV     GF V I +  V+F SN+I++KQ+ALK +RK+ VL+ I+  F  YV
Sbjct: 1   FVSVISITFVGYCNAGFVVAIWIVVVLFNSNDILRKQSALKRERKMLVLVGISVGFTLYV 60

Query: 242 MCIYWWHCNDDL 253
           + +YWW+ NDDL
Sbjct: 61  VGVYWWYQNDDL 72


>Glyma09g40790.1 
          Length = 77

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/39 (71%), Positives = 35/39 (89%)

Query: 363 KVRCFFSALKALSKHEVHYGAYATMEQVNAAGNLCAICQ 401
           +V+ FF+A+KALS+ E+HYGA AT EQVNAAG+LCAICQ
Sbjct: 16  QVQSFFAAVKALSRKEMHYGACATSEQVNAAGDLCAICQ 54