Miyakogusa Predicted Gene

Lj0g3v0078809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078809.1 Non Chatacterized Hit- tr|B9SEW5|B9SEW5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.74,4e-19,Nup160,Nucleoporin Nup120/160; seg,NULL,CUFF.4033.1
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g20540.1                                                       168   2e-42
Glyma10g06230.1                                                       164   3e-41

>Glyma13g20540.1 
          Length = 1252

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 96/124 (77%), Gaps = 7/124 (5%)

Query: 1   MVASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMAGANFQRLWVG 60
           MV + Q+L I EL EKKF+FVLHLDGTLRIWDLASH RVF++NMG MAMAGA F RLWVG
Sbjct: 222 MVGTVQELAILELHEKKFVFVLHLDGTLRIWDLASHSRVFSNNMGTMAMAGATFVRLWVG 281

Query: 61  QSYPELSRIPLAILYGHS-------PDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLE 113
           Q YP+ S IPLA+LY  +        DE+L MISL+ +L+N GDRI+FSMEPSVQN+ LE
Sbjct: 282 QPYPDSSVIPLAVLYRDTLFLGLIVKDESLEMISLYSVLFNFGDRIVFSMEPSVQNIPLE 341

Query: 114 EVIC 117
           E  C
Sbjct: 342 EGRC 345


>Glyma10g06230.1 
          Length = 1464

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 95/118 (80%), Gaps = 1/118 (0%)

Query: 1   MVASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMA-GANFQRLWV 59
           MV + Q+LVI EL EKKF+FVLHLDGTLRIWDLAS  RVF++NMG + MA GA F +LWV
Sbjct: 215 MVGTVQELVILELHEKKFVFVLHLDGTLRIWDLASRSRVFSNNMGTVTMAAGATFVKLWV 274

Query: 60  GQSYPELSRIPLAILYGHSPDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLEEVIC 117
           GQ YP+ + IPLA+LY  + DENL MISL+ ILYN GDRI+FSM+PSVQ++ LEE  C
Sbjct: 275 GQPYPDSNIIPLAVLYRDTSDENLEMISLYSILYNFGDRIVFSMDPSVQSIPLEEGRC 332