Miyakogusa Predicted Gene

Lj0g3v0078349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078349.1 Non Chatacterized Hit- tr|C6SVR3|C6SVR3_SOYBN
Uncharacterized protein OS=Glycine max PE=2
SV=1,85.71,5e-18,seg,NULL,CUFF.3986.1
         (66 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g48220.1                                                        69   2e-12
Glyma04g12170.2                                                        67   6e-12
Glyma04g12170.1                                                        62   2e-10

>Glyma06g48220.1 
          Length = 176

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 11  QLLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLKVRDV 66
            LLGWLVASPFILGTLYIVLLPCFK LV KFS+V             E+ LKVRDV
Sbjct: 122 ALLGWLVASPFILGTLYIVLLPCFKILVHKFSSV-PLSPKKPLNPHSEVKLKVRDV 176


>Glyma04g12170.2 
          Length = 183

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 11  QLLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLKVRDV 66
            LLGWLVASPFILGTLYIVLLPCFK LV  FS+V             E+ LKVRDV
Sbjct: 129 ALLGWLVASPFILGTLYIVLLPCFKILVHNFSSV-PLSPKKPLNPHSEVKLKVRDV 183


>Glyma04g12170.1 
          Length = 293

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 30/33 (90%)

Query: 12  LLGWLVASPFILGTLYIVLLPCFKFLVQKFSTV 44
           LLGWLVASPFILGTLYIVLLPCFK LV  FS+V
Sbjct: 130 LLGWLVASPFILGTLYIVLLPCFKILVHNFSSV 162