Miyakogusa Predicted Gene

Lj0g3v0078009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078009.1 Non Chatacterized Hit- tr|B9RVF0|B9RVF0_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.97,0.0000000000001,seg,NULL,CUFF.3968.1
         (211 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g40100.1                                                       142   2e-34

>Glyma02g40100.1 
          Length = 204

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 126/212 (59%), Gaps = 23/212 (10%)

Query: 11  SRPSNF-----QQKKKLD-----HHEKLTRQLSNFSSSNEAYHGGKSASIPFTWESQPGT 60
           S+PSN       Q+K+ D      H KL R+LSN S  NEAYH  +S+SIPF WESQPGT
Sbjct: 3   SKPSNIVVQRNHQRKEKDTMMSLDHSKLKRELSNLS--NEAYHV-ESSSIPFVWESQPGT 59

Query: 61  PKVRFQDNYLPPLTPPPSYFQ--NATKNPITKSKKNPKASFLQTMFSKRSTRKGCXXXXX 118
           PKVRF++N LPPLTPPPSYFQ          K+K +PK+SFLQT+F KR+TRKG      
Sbjct: 60  PKVRFKENSLPPLTPPPSYFQNATKKATTKAKNKNSPKSSFLQTLFPKRATRKGGVPPQT 119

Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVHSRTSFSVPSSPMVHWRKGEEEEDL 178
                                                 TS+SVPSSPM+H RKGEE+EDL
Sbjct: 120 GSQNIWSYSSNSPSSSSSSSSSSLSFSSPRP-------TSYSVPSSPMIHSRKGEEDEDL 172

Query: 179 YEVSDSNMSSGGNARSRGRYSSMFKKVLLGDF 210
           YEVS S +   GNARSRG YSSMFKKVLLGDF
Sbjct: 173 YEVSSSGLCF-GNARSRGCYSSMFKKVLLGDF 203