Miyakogusa Predicted Gene

Lj0g3v0077939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077939.1 tr|Q8GU51|Q8GU51_ORYSJ MRP-like ABC transporter
(Fragment) OS=Oryza sativa subsp. japonica GN=mrp1
P,71.67,2e-19,ABC_TM1F,ABC transporter, integral membrane type 1;
PREDICTED: SIMILAR TO ATP-BINDING CASSETTE C5 SP,CUFF.3964.1
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46940.1                                                       116   6e-27
Glyma15g09900.1                                                        99   7e-22
Glyma13g29180.1                                                        97   3e-21
Glyma20g30490.1                                                        49   1e-06
Glyma10g37160.1                                                        49   2e-06

>Glyma06g46940.1 
          Length = 1652

 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 57/60 (95%)

Query: 2   LSKEGLKQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYAEN 61
           L+KEGL+QTDKRVGLMNEILAAMDTVKCYAWETSFQSRI SIRD ELSWFRKAQL+YA N
Sbjct: 504 LTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDNELSWFRKAQLLYALN 563


>Glyma15g09900.1 
          Length = 1620

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 55/60 (91%)

Query: 2   LSKEGLKQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYAEN 61
           LSKEGL++TDKR+GLMNEILAAMDT+K YAWE+SFQS++Q +RD+ELSWFRKA L+ A N
Sbjct: 467 LSKEGLQRTDKRIGLMNEILAAMDTLKYYAWESSFQSKVQIVRDDELSWFRKASLLGACN 526


>Glyma13g29180.1 
          Length = 1613

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 54/60 (90%)

Query: 2   LSKEGLKQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYAEN 61
            SKEGL++TDKR+GLMNEILAAMDTVK YAWE+SFQS++Q +R++ELSWFRKA L+ A N
Sbjct: 460 FSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACN 519


>Glyma20g30490.1 
          Length = 1455

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 11  DKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYAEN 61
           D+R+   +E L  M  +K YAWET+F+S I+ +R+EEL W    QL  A N
Sbjct: 458 DERLKACSEALVNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYN 508


>Glyma10g37160.1 
          Length = 1460

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 11  DKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYAEN 61
           D R+   +E L  M  +K YAWET+F+S I+ +R+EEL W    QL  A N
Sbjct: 463 DDRLKACSEALVNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYN 513