Miyakogusa Predicted Gene

Lj0g3v0077789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077789.1 tr|G7I4E3|G7I4E3_MEDTR DNA polymerase I family
protein expressed OS=Medicago truncatula
GN=MTR_1g008,59.71,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; DNA POLYMERASE THETA,NULL; HELICA,CUFF.3947.1
         (719 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g20430.1                                                       733   0.0  
Glyma06g21970.1                                                        59   3e-08
Glyma16g07850.1                                                        56   2e-07

>Glyma14g20430.1 
          Length = 1824

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/450 (79%), Positives = 388/450 (86%), Gaps = 1/450 (0%)

Query: 267 MAECY-TPGSLIVKACIKDTPKSTRGSSMFSPGEAFWNEAIQLADGLCVPVVNDSSKVIE 325
           +AE Y TPGSLIVKA +++TPKSTRGSS FSPGEAFWNEAIQLADGLCVP+ ND SKV+ 
Sbjct: 3   LAEYYNTPGSLIVKASVRETPKSTRGSSSFSPGEAFWNEAIQLADGLCVPMGNDPSKVMG 62

Query: 326 ESNVAEDQAEVKNSCNLQNYDGKQRKVLDQSKSRIWDREMSTPLGLARMHTQESIKEASG 385
           ESNV E++ E+KNSCNLQNYDGK RK+LDQSK+RI +REM  PLGL  MHT++S+KEAS 
Sbjct: 63  ESNVVEEEPEMKNSCNLQNYDGKPRKILDQSKNRIRNREMGAPLGLVGMHTKDSVKEASS 122

Query: 386 LPVKHFDFSFEDKNLDENTRQNCCVDDLVNVACGAGRQYESGSITGHAYEKMNEVQEKAS 445
           LPVKHFDFSFED NL+ENT Q+C V D +NV C AG+QY+S S+ GH YEKMNEVQE   
Sbjct: 123 LPVKHFDFSFEDNNLEENTLQDCRVGDSINVTCVAGKQYDSCSMIGHTYEKMNEVQENTL 182

Query: 446 VDALGKRLCQDNASMTSNSPPNQVMTAIGRHASDEASTPSSSVKLNDHLDLSSWLPPEIC 505
           VD LGKR+CQDN SMTSNSP N+V T I  HASDEASTPS+SV LNDH DL+SWLPPEIC
Sbjct: 183 VDTLGKRVCQDNVSMTSNSPHNEVRTPISAHASDEASTPSTSVSLNDHFDLNSWLPPEIC 242

Query: 506 SIYRKKGISKLYSWQVDCLRVNGVLQRRNLVYCASTSAGKSFVAEILMLRRVITTGKMAV 565
           SIYRKKGIS+LYSWQVDCLRV+GVLQRRNLVYCASTSAGKSFVAEILMLRRVI TGKMA+
Sbjct: 243 SIYRKKGISRLYSWQVDCLRVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMAL 302

Query: 566 LVLPYVSICAEKAEHLEQLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRL 625
           LVLPYVSICAEKAEHLE+LL+PLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSL+NRL
Sbjct: 303 LVLPYVSICAEKAEHLERLLDPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLVNRL 362

Query: 626 LEEGRLSEMGIIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKA 685
           LEEGRLSEMGIIVIDELHMVGD  RGYLLELMLTKLRYAA                  KA
Sbjct: 363 LEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGIPKSSDGESSGGSSDKA 422

Query: 686 DPIQGLQIVGMSATMPNVAAVADWLQVPIY 715
           DP QGLQIVGMSATMPNVAAVADWLQ  +Y
Sbjct: 423 DPAQGLQIVGMSATMPNVAAVADWLQAALY 452


>Glyma06g21970.1 
          Length = 1178

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 23/182 (12%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVL-PYVSICAEK-AEHLEQLLEPLGKH 591
           N++  A T +GK+  AE+ MLR   T   M V+ + P  +I  E+ ++  ++L+  LGK 
Sbjct: 557 NVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKK 616

Query: 592 VRSYYGNQGGG-TLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSR 650
           +    G+     T     ++ + T EK + +         ++++G++++DE+H++G   R
Sbjct: 617 MVEMTGDYTPDLTALLSANIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLG-ADR 675

Query: 651 GYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWL 710
           G +LE++++++RY +                       + ++ VG+S  + N   +ADWL
Sbjct: 676 GPILEVIVSRMRYISSQTE-------------------RAVRFVGLSTALANAGDLADWL 716

Query: 711 QV 712
            V
Sbjct: 717 GV 718


>Glyma16g07850.1 
          Length = 893

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 33/198 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRV---ITTGKM---------AVLVLPYVSICAEKAEHL 581
           N+V  A T +GK+ + E+ +LR +   IT  +           + + P  ++  EK    
Sbjct: 42  NMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLPK---DTSVAVCTIEKANSLINRLLEEGRLS---EMG 635
            +   P G +     G+    T P+   +  + + T EK +++    +E G LS   ++ 
Sbjct: 102 NKKFGPWGINCLELTGDNESYT-PRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDIS 160

Query: 636 IIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVG 695
           +++IDE+H++ D  RG  LE ++++++  +                  K++P+  ++ + 
Sbjct: 161 LLLIDEVHLLND-PRGAALEAIVSRIKIVSGNPKM-------------KSNPLAQVRFLA 206

Query: 696 MSATMPNVAAVADWLQVP 713
           +SAT+PN+  +A WL+VP
Sbjct: 207 VSATIPNIEDLAKWLEVP 224