Miyakogusa Predicted Gene

Lj0g3v0075949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075949.1 Non Chatacterized Hit- tr|J3N3Z3|J3N3Z3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,38.51,3e-19,MUTS RELATED,NULL; DNA MISMATCH REPAIR MUTS
RELATED PROTEINS,NULL,CUFF.3840.1
         (172 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g38590.1                                                       239   7e-64
Glyma14g36780.1                                                       152   1e-37

>Glyma02g38590.1 
          Length = 756

 Score =  239 bits (611), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/182 (68%), Positives = 144/182 (79%), Gaps = 10/182 (5%)

Query: 1   MEKFKQEYQELLAEGRHYLMHSRELHNSLLNTRRKIAEHSTKLRFKKMREVSEAAATARS 60
           ME+ KQEYQELL E RHYL HSR L+NSLLNTRRKI E+ST LRFKKMR+VSEAAA ARS
Sbjct: 574 MERLKQEYQELLDEARHYLRHSRGLYNSLLNTRRKIIEYSTNLRFKKMRDVSEAAAMARS 633

Query: 61  DIHKKVREMDALAKQASQHKKSIKSSPSSATNSLHTAADNKKPTIADRSASAIKKLNQSS 120
            +HKKVRE+DA AKQ SQ+ K+I SS  SATN   T A+NK+PTIAD+SAS++K      
Sbjct: 634 ILHKKVRELDASAKQPSQNNKTISSSNLSATNKSQTVAENKEPTIADKSASSVKPFFLPG 693

Query: 121 ----------SDRFELPKVGDMVHVASLGKKVTVLKVDSSKGDIVVQAGNMKLKLKVTDI 170
                     S++   PKVGDMVHV+SLGK+VTVLKVDSSKG+IVVQAGNMKLKLK+TDI
Sbjct: 694 DSIVHVKVVLSNKSGPPKVGDMVHVSSLGKQVTVLKVDSSKGEIVVQAGNMKLKLKLTDI 753

Query: 171 QR 172
           QR
Sbjct: 754 QR 755


>Glyma14g36780.1 
          Length = 711

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 105/167 (62%), Gaps = 36/167 (21%)

Query: 6   QEYQELLAEGRHYLMHSRELHNSLLNTRRKIAEHSTKLRFKKMREVSEAAATARSDIHKK 65
           Q+YQ+LL E RHYL   R LHNSLLNTRRKI E+ST LRFKKMR+VSEAA  A S +HKK
Sbjct: 581 QDYQDLLDEARHYL---RGLHNSLLNTRRKIMEYSTNLRFKKMRDVSEAAVMAGSVLHKK 637

Query: 66  VREMDALAKQASQHKKSIKSSPSSATNSLHTAADNKKPTIADRSASAIKKLNQSSSDRFE 125
           +     L  Q   + K +K                +KP             N  S     
Sbjct: 638 L-----LINQDQVYAKIMK-----------LEGIKRKP-------------NYKSGP--- 665

Query: 126 LPKVGDMVHVASLGKKVTVLKVDSSKGDIVVQAGNMKLKLKVTDIQR 172
            PKVGDMVHV+SLGKKVTVLKVD SKG+IVVQAGNMKLKLK+TDIQR
Sbjct: 666 -PKVGDMVHVSSLGKKVTVLKVDLSKGEIVVQAGNMKLKLKLTDIQR 711