Miyakogusa Predicted Gene

Lj0g3v0075319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075319.1 tr|G2XMP1|G2XMP1_ORYGL Hypothetical_protein
OS=Oryza glaberrima GN=Ogl11g0094H08_1 PE=4 SV=1,36.75,6e-19,seg,NULL;
GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1,NULL; TRANSCRIPTION
INITIATION FACTOR IIE, ALPH,CUFF.3783.1
         (252 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g13090.1                                                       310   1e-84
Glyma05g07910.1                                                       309   2e-84
Glyma18g23280.1                                                       285   4e-77
Glyma06g23400.1                                                       283   1e-76
Glyma06g23400.2                                                       282   3e-76
Glyma01g09630.1                                                       168   5e-42

>Glyma17g13090.1 
          Length = 463

 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/219 (75%), Positives = 173/219 (78%), Gaps = 5/219 (2%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQLSRVKDLPVPEFGSLQAWE          NGDIN GDSK SQLGYNG  +PYSG
Sbjct: 227 KPLMDQLSRVKDLPVPEFGSLQAWEARASAAVRAANGDINAGDSKISQLGYNG--VPYSG 284

Query: 74  DTKVVVDFNGTEVKGEGVKSEAD-TSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFN TE KGEGVKSE D TSLKVLPPWMITSGMNLTKEQRGEVKQE KMD TST
Sbjct: 285 DTKVVVDFN-TEGKGEGVKSETDSTSLKVLPPWMITSGMNLTKEQRGEVKQETKMDETST 343

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQE-EVAKNQQSVDTQAADDPSSS 191
           STA QYTDDKK +IGHD+N+NIQDEYIKAYYAALLKQ E E A  +Q  +T AADDPSSS
Sbjct: 344 STAVQYTDDKKLTIGHDNNQNIQDEYIKAYYAALLKQHELEEAAKKQLPNTLAADDPSSS 403

Query: 192 TFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           T  RQVGMKSK            AP+ GNGN GYKVDLN
Sbjct: 404 TSNRQVGMKSKREEDDDCTEWEEAPIAGNGNGGYKVDLN 442


>Glyma05g07910.1 
          Length = 465

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 175/221 (79%), Gaps = 8/221 (3%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQLSRVKDLPVPEFGSLQAWE          NGDIN GDSK SQ GYNG  +PYSG
Sbjct: 227 KPLMDQLSRVKDLPVPEFGSLQAWEARASAAVRAANGDINAGDSKISQPGYNG--VPYSG 284

Query: 74  DTKVVVDFNGTEVKGEGVKSEAD-TSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFN TE KGEGVKSE D TSLKVLPPWMITSGMNLTKEQRGEVKQE KMDGTST
Sbjct: 285 DTKVVVDFN-TEGKGEGVKSETDSTSLKVLPPWMITSGMNLTKEQRGEVKQETKMDGTST 343

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQ---EEVAKNQQSVDTQAADDPS 189
           STAAQYTDDKKS+IGHD+N+NIQDEYIKAYYAALLKQQ   EE AK Q S +T AA +PS
Sbjct: 344 STAAQYTDDKKSTIGHDNNQNIQDEYIKAYYAALLKQQHELEEAAKKQLS-NTLAAANPS 402

Query: 190 SSTFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           SST  RQVGMKSK            AP+ GNGN GY VDLN
Sbjct: 403 SSTSIRQVGMKSKREEDDDDTEWEEAPIAGNGNGGYTVDLN 443


>Glyma18g23280.1 
          Length = 287

 Score =  285 bits (728), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/220 (69%), Positives = 165/220 (75%), Gaps = 5/220 (2%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQLSRVKDLPVPEFGSL AWE          NGDI+G DSK SQLGYNGA MPYSG
Sbjct: 51  KPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDISG-DSKMSQLGYNGAAMPYSG 109

Query: 74  DTKVVVDFNGTEVKGEGVKSEA-DTSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFNGTE   + VKSE   TSLKVLPPWMI SGM LTKEQRGEVK+EMKMDGTS 
Sbjct: 110 DTKVVVDFNGTE-DTKDVKSETGSTSLKVLPPWMIKSGMVLTKEQRGEVKEEMKMDGTSI 168

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEV--AKNQQSVDTQAADDPSS 190
           ST+AQY DDKKS++ HDD +NIQDEYIKAYYAALLKQQ E+  A  Q+  +T  A+DPSS
Sbjct: 169 STSAQYLDDKKSTVDHDDKRNIQDEYIKAYYAALLKQQHELEAASKQELSNTLTANDPSS 228

Query: 191 STFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           S   RQVGMKSK            AP+ G GN  YKVDLN
Sbjct: 229 SASNRQVGMKSKLEEDDDGTEWEEAPVAGTGNENYKVDLN 268


>Glyma06g23400.1 
          Length = 469

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/220 (68%), Positives = 165/220 (75%), Gaps = 5/220 (2%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQLSRVKDLPVPEFGSL AWE          NGD++G DSK SQLGYNGAPMPYSG
Sbjct: 233 KPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSG-DSKMSQLGYNGAPMPYSG 291

Query: 74  DTKVVVDFNGTEVKGEGVKSEA-DTSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFNGTE   + VKSE    SLKVLPPWMI SGM LTKEQRGE K+E+KMDGTST
Sbjct: 292 DTKVVVDFNGTE-DIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEAKEEIKMDGTST 350

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEV--AKNQQSVDTQAADDPSS 190
           S++AQY DDKKS++ HDD KNIQDEYIKAYYAALLKQQ E+  A  Q+  +T  A+DPSS
Sbjct: 351 SSSAQYLDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEAASKQELPNTLTANDPSS 410

Query: 191 STFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           S   RQVGMKSK            AP+ G GN  YKVDLN
Sbjct: 411 SASNRQVGMKSKLEEDDDGTEWEEAPVAGIGNENYKVDLN 450


>Glyma06g23400.2 
          Length = 375

 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/220 (68%), Positives = 165/220 (75%), Gaps = 5/220 (2%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQLSRVKDLPVPEFGSL AWE          NGD++G DSK SQLGYNGAPMPYSG
Sbjct: 139 KPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSG-DSKMSQLGYNGAPMPYSG 197

Query: 74  DTKVVVDFNGTEVKGEGVKSEA-DTSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFNGTE   + VKSE    SLKVLPPWMI SGM LTKEQRGE K+E+KMDGTST
Sbjct: 198 DTKVVVDFNGTE-DIKDVKSETGSASLKVLPPWMIKSGMVLTKEQRGEAKEEIKMDGTST 256

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEV--AKNQQSVDTQAADDPSS 190
           S++AQY DDKKS++ HDD KNIQDEYIKAYYAALLKQQ E+  A  Q+  +T  A+DPSS
Sbjct: 257 SSSAQYLDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEAASKQELPNTLTANDPSS 316

Query: 191 STFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           S   RQVGMKSK            AP+ G GN  YKVDLN
Sbjct: 317 SASNRQVGMKSKLEEDDDGTEWEEAPVAGIGNENYKVDLN 356


>Glyma01g09630.1 
          Length = 128

 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 100/129 (77%), Gaps = 5/129 (3%)

Query: 93  SEAD-TSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTSTSTAAQYTDDKKSSIGHDDN 151
           SE D TSLKVLPPWMITSG+NLTKEQ GEVKQE KMDGTSTST AQ TDDKKS IGHD+N
Sbjct: 1   SETDSTSLKVLPPWMITSGVNLTKEQHGEVKQETKMDGTSTSTTAQNTDDKKSKIGHDNN 60

Query: 152 KNIQDEYIKAYYAALLKQQ---EEVAKNQQSVDTQAADDPSSSTFGRQVGMKSKXXXXXX 208
           +NIQD+YIKAYYAALLKQQ   EEVAK Q S +T AA +PSSST  RQVGMKSK      
Sbjct: 61  QNIQDKYIKAYYAALLKQQHKLEEVAKKQLS-NTFAAANPSSSTSNRQVGMKSKCEEDDD 119

Query: 209 XXXXXXAPL 217
                 AP+
Sbjct: 120 DTEWEEAPI 128