Miyakogusa Predicted Gene

Lj0g3v0074139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0074139.1 Non Chatacterized Hit- tr|B9G1U6|B9G1U6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,64.91,3e-18,seg,NULL,CUFF.3705.1
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g08240.1                                                       122   9e-29
Glyma06g08310.1                                                        63   8e-11

>Glyma04g08240.1 
          Length = 153

 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 1/70 (1%)

Query: 49  SDATIVCEPCNGKGWLLCDFCKGQKTNVKADN-KRVYRRCPSCRAVGYVLCPSCKVFKCV 107
           + A IVCEPCNG GWL+CDFC GQKTNVKA+N KR+YRRCPSC+AVGYVLC  CKVFKCV
Sbjct: 84  NQAGIVCEPCNGTGWLVCDFCNGQKTNVKAENNKRIYRRCPSCKAVGYVLCSKCKVFKCV 143

Query: 108 TFPNFNDAQS 117
           TFPNFND+++
Sbjct: 144 TFPNFNDSEN 153


>Glyma06g08310.1 
          Length = 122

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 47 ADSDATIVCEPCNGKGWLLCDFCKGQKTNVKA-DNKRVY 84
          + +   I+CEPCNG GWL+CDFC GQKTNVKA +NKR Y
Sbjct: 20 STTQTVIMCEPCNGTGWLVCDFCNGQKTNVKAQNNKRTY 58