Miyakogusa Predicted Gene

Lj0g3v0067909.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067909.2 tr|A9SX66|A9SX66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110121,56.98,2e-18,no description,NULL; seg,NULL;
Riboflavin synthase domain-like,Riboflavin synthase-like
beta-barrel,CUFF.3229.2
         (241 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g02800.1                                                       221   5e-58
Glyma15g13680.1                                                       215   3e-56
Glyma11g08230.1                                                        50   2e-06
Glyma16g23710.1                                                        50   2e-06
Glyma02g05350.1                                                        49   5e-06

>Glyma09g02800.1 
          Length = 377

 Score =  221 bits (563), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/133 (81%), Positives = 117/133 (87%), Gaps = 3/133 (2%)

Query: 30  KMAVTAPVGSDLSIRRSGFKASNFNFWDNSWAPVFTLDLKANSSCVRSRQVICMSVPVQQ 89
           +MAVT PVGSDLS+RRS  KA NFNFWD SWAPVFTL LKAN+S +RSR V+ MSV  QQ
Sbjct: 8   QMAVTVPVGSDLSLRRSAVKAPNFNFWDKSWAPVFTLYLKANNSSLRSRHVVFMSV--QQ 65

Query: 90  ASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGNV 148
           ASVPKV VSPLELE A EPPLNLHKPK+PYT TIVSV+R+VGPKAPGETCHIVIDHGGNV
Sbjct: 66  ASVPKVNVSPLELEDAKEPPLNLHKPKEPYTATIVSVDRLVGPKAPGETCHIVIDHGGNV 125

Query: 149 PYWEGQSYGFIPP 161
           PYWEGQSYG IPP
Sbjct: 126 PYWEGQSYGVIPP 138


>Glyma15g13680.1 
          Length = 377

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 115/133 (86%), Gaps = 3/133 (2%)

Query: 30  KMAVTAPVGSDLSIRRSGFKASNFNFWDNSWAPVFTLDLKANSSCVRSRQVICMSVPVQQ 89
           +MAVT PVG+DLS+RRS  KA N NFWD SWAPVFTLDLK N+  +RSR V+CMS  VQQ
Sbjct: 8   QMAVTVPVGNDLSLRRSAVKAPNLNFWDKSWAPVFTLDLKPNNPSLRSRHVVCMS--VQQ 65

Query: 90  ASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGNV 148
           ASV KV VSPLELE A EPPLNL+KPK+PYT TIVSV+R+VGPKAPGETCHIVIDHGGNV
Sbjct: 66  ASVSKVNVSPLELEDAKEPPLNLYKPKEPYTATIVSVDRLVGPKAPGETCHIVIDHGGNV 125

Query: 149 PYWEGQSYGFIPP 161
           PYWEGQSYG IPP
Sbjct: 126 PYWEGQSYGVIPP 138


>Glyma11g08230.1 
          Length = 362

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 98  SPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYW 151
           +P ++E  S+       +N  KPK PY     +  +I G  APGET H+V    G VPY 
Sbjct: 60  APAKVEKESKKQEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYR 119

Query: 152 EGQSYGFIPPVSD 164
           EGQS G IP   D
Sbjct: 120 EGQSIGVIPDGVD 132


>Glyma16g23710.1 
          Length = 362

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 81  ICMSVPVQQASVPKVIVSPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAP 134
           +C S  V          +P ++E  S+       +N  KPK PY     +  +I G  AP
Sbjct: 43  VCSSGRVVSIRAQVTTEAPAKVEKESKKQDEGVVVNKFKPKTPYVGRCLLNTKITGDDAP 102

Query: 135 GETCHIVIDHGGNVPYWEGQSYGFIPPVSD 164
           GET H+V    G +PY EGQS G IP   D
Sbjct: 103 GETWHMVFSTEGEIPYREGQSIGVIPDGVD 132


>Glyma02g05350.1 
          Length = 362

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 110 LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVIDHGGNVPYWEGQSYGFIP 160
           +N  KPK PY     +  +I G  APGET H+V    G +PY EGQS G IP
Sbjct: 77  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIP 128