Miyakogusa Predicted Gene

Lj0g3v0067139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067139.1 tr|Q0QFS0|Q0QFS0_9EUKA DNA-directed RNA
polymerase (Fragment) OS=Paravahlkampfia sp. LA GN=mtRNAP
PE,45.98,3e-19,DNA/RNA polymerases,NULL; DNA-DIRECTED RNA POLYMERASE,
MITOCHONDRIAL,DNA-directed RNA polymerase, ph,CUFF.3170.1
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g24350.1                                                       174   3e-44
Glyma17g07940.1                                                       161   1e-40
Glyma06g24890.1                                                       152   1e-37
Glyma08g32320.6                                                       145   1e-35
Glyma16g13120.1                                                       141   1e-34
Glyma08g28120.1                                                       125   1e-29
Glyma18g51160.1                                                       113   4e-26
Glyma02g36790.1                                                        56   9e-09

>Glyma04g24350.1 
          Length = 547

 Score =  174 bits (440), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/87 (87%), Positives = 80/87 (91%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTALAC+DAGLCFAGVHDSFWTH CDVE MN+ILRE FVELY+MPILENLLE FQT Y
Sbjct: 461 MMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKFVELYNMPILENLLEGFQTTY 520

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           PGLAFP LPK GDFDL+KVLDSPYFFN
Sbjct: 521 PGLAFPPLPKRGDFDLQKVLDSPYFFN 547


>Glyma17g07940.1 
          Length = 984

 Score =  161 bits (408), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/88 (81%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTALAC DAGLCFAGVHDSFWTHACDVE M++ILRE FVELY MPILENLLE F+T Y
Sbjct: 897 MMMTALACRDAGLCFAGVHDSFWTHACDVEKMSQILREKFVELYSMPILENLLEGFETSY 956

Query: 61  PGLAFPSLP-KTGDFDLRKVLDSPYFFN 87
           PGL FP LP + GDFDL+KVL+SPYFFN
Sbjct: 957 PGLTFPPLPERRGDFDLQKVLESPYFFN 984


>Glyma06g24890.1 
          Length = 474

 Score =  152 bits (383), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/78 (85%), Positives = 71/78 (91%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTALAC+DAGLCFAGVHDSFWTH CDVE MN+ILRE FVELY+MPILENLLE FQT Y
Sbjct: 397 MMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKFVELYNMPILENLLEGFQTTY 456

Query: 61  PGLAFPSLPKTGDFDLRK 78
           PGLAFP LPK GDFDL+K
Sbjct: 457 PGLAFPPLPKRGDFDLQK 474


>Glyma08g32320.6 
          Length = 276

 Score =  145 bits (365), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 72/87 (82%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMT +AC  AGL FAGVHDS+WTHACDV+ MNRILRE FVELYD PILENLLE FQ  +
Sbjct: 190 MMMTTVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYDAPILENLLESFQKTF 249

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L FP LP+ GDFDL++VL+S YFFN
Sbjct: 250 PALNFPPLPERGDFDLQEVLESTYFFN 276


>Glyma16g13120.1 
          Length = 224

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 72/87 (82%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC  AGL FAGVHDS+WTHACDV+ MNRILRE FVELYD PILENLLE FQ  +
Sbjct: 138 MMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYDAPILENLLESFQKTF 197

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L FP LP+ GDFDL++VL S YFFN
Sbjct: 198 PALNFPPLPERGDFDLQEVLGSAYFFN 224


>Glyma08g28120.1 
          Length = 386

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 76/87 (87%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC   GL FAGVHDS+WTHACDV+ MNRILRE FVELY+ P+LENLLE FQ+ +
Sbjct: 300 MMMTAVACKKEGLNFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQSSF 359

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L+FPSLP+ GDFDLR+VL+SPYFFN
Sbjct: 360 PSLSFPSLPERGDFDLREVLESPYFFN 386


>Glyma18g51160.1 
          Length = 924

 Score =  113 bits (283), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/80 (72%), Positives = 69/80 (86%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC   GL FAGVHDS+WTHACDV+ MNRILRE FVELY+ P+LENLLE FQ+ +
Sbjct: 844 MMMTAVACKKEGLSFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQSSF 903

Query: 61  PGLAFPSLPKTGDFDLRKVL 80
           P L+FPSLP+ GDFDL++VL
Sbjct: 904 PSLSFPSLPERGDFDLKEVL 923


>Glyma02g36790.1 
          Length = 442

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 10/70 (14%)

Query: 10  DAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMYPGLAFPSLP 69
           DAGLCFAG   SF+    + +  ++      +++Y      NLLE F+T YPGLAFP LP
Sbjct: 382 DAGLCFAGFKTSFYYQ--NPKAYSK-FPSKVIKVY------NLLEGFETSYPGLAFPPLP 432

Query: 70  -KTGDFDLRK 78
            + GDFDL+K
Sbjct: 433 ERRGDFDLQK 442