Miyakogusa Predicted Gene

Lj0g3v0066829.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066829.2 tr|I0YVG9|I0YVG9_9CHLO RNB-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,32.32,0.00000000000003,RIBONUCLEASE II,NULL; RIBONUCLEASE,NULL;
coiled-coil,NULL; seg,NULL,CUFF.3144.2
         (363 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g25560.1                                                       451   e-127

>Glyma18g25560.1 
          Length = 692

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/267 (81%), Positives = 239/267 (89%), Gaps = 10/267 (3%)

Query: 107 LLLEFKKDSERILLAVAQRPDGKKNWMVSDQNGVSSSIKPQQVTFIVPGIDNFDRADIAD 166
           LLLEFKKDS+R+LLAVAQRPDGKKNWMVSDQNG +SSIKPQQVT+IVPGIDNFD+ADIAD
Sbjct: 1   LLLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNGFTSSIKPQQVTYIVPGIDNFDQADIAD 60

Query: 167 FVQKAQDNMDPSLLEFAWIELLEKNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVYF 226
           F QKAQDNMDPSLLEFAW+ELLEKNKSVTVEELAEIIFGS E LESYSAHLLLSKDEVYF
Sbjct: 61  FAQKAQDNMDPSLLEFAWVELLEKNKSVTVEELAEIIFGSTEALESYSAHLLLSKDEVYF 120

Query: 227 SVLETKGFRSIYGPRPS----------EQVEELIRRKIAKEAAENEFQEFIKLLASAKSM 276
           +VLETKGFRS+YGPRPS           QVEELI +K+AKEA E EFQEFI+LLAS KSM
Sbjct: 121 TVLETKGFRSVYGPRPSGQKEREIALGRQVEELIHQKLAKEAVEKEFQEFIELLASVKSM 180

Query: 277 PRQDKPSKSSWVNEEKNWSRIESLQAYALDSCKNDEQRKTAGAILKEMGLAKTASSAVNL 336
             QDKP K SW  +E+ WSRIESL+AYA+D+CKNDEQRKTAG +LKEMGLAKTASSAV L
Sbjct: 181 SSQDKPPKHSWTKDERIWSRIESLEAYAIDACKNDEQRKTAGMVLKEMGLAKTASSAVKL 240

Query: 337 LVDIGYFPVHVNLELLKLGIPTDHSEE 363
           L+DIGYFPVH+NL+LLKLGIPTDHS+E
Sbjct: 241 LIDIGYFPVHINLDLLKLGIPTDHSDE 267