Miyakogusa Predicted Gene

Lj0g3v0065059.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065059.3 Non Chatacterized Hit- tr|I3SV15|I3SV15_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.12,0,UBIQUITIN
DOMAIN CONTAINING 1 PROTEIN-RELATED,NULL; seg,NULL,CUFF.3090.3
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36010.1                                                       193   4e-50
Glyma13g34340.1                                                       105   1e-23
Glyma15g21700.1                                                        67   3e-12

>Glyma12g36010.1 
          Length = 114

 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 94/113 (83%)

Query: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDXXX 60
           MGCAGSSQSK DG  KKIRKPKPWKHPQPIT+TQL QLRDEFWDTAPHYGGRKEIWD   
Sbjct: 1   MGCAGSSQSKPDGAVKKIRKPKPWKHPQPITKTQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  XXXXXXXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113
                       IVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD
Sbjct: 61  AAAEADLTLAQVIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113


>Glyma13g34340.1 
          Length = 120

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 72/122 (59%), Gaps = 12/122 (9%)

Query: 1   MGCAGSSQSKADGTEKKIRKP-------KPWKHPQPITRTQLIQLRDEFWDTAPHYGGRK 53
           MGCAGSSQSK DG    +  P         +    PI+    +++   F+     +G R+
Sbjct: 1   MGCAGSSQSKPDGEPPLLFNPLKTSSLHSLFVKSLPISSWVAVKIPSFFF---LFHGIRE 57

Query: 54  E--IWDXXXXXXXXXXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLI 111
           +  IWD               IVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLI
Sbjct: 58  QA*IWDALRAAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLI 117

Query: 112 RD 113
           RD
Sbjct: 118 RD 119


>Glyma15g21700.1 
          Length = 35

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 31/34 (91%)

Query: 20 KPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRK 53
          KPKPWKHPQPIT+TQL QL DEFW+TAPHY GRK
Sbjct: 1  KPKPWKHPQPITKTQLTQLSDEFWNTAPHYDGRK 34