Miyakogusa Predicted Gene

Lj0g3v0064269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064269.1 Non Chatacterized Hit- tr|B9RIY4|B9RIY4_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,55.14,2e-16,coiled-coil,NULL; seg,NULL; K_BOX,Transcription
factor, K-box; K-box,Transcription factor, K-box,CUFF.2950.1
         (122 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g00400.1                                                       110   3e-25
Glyma13g06820.1                                                        49   2e-06

>Glyma20g00400.1 
          Length = 330

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 19/122 (15%)

Query: 1   MRGLKYEELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLIQEHR 60
           MRGL+YE+L +LE +LENS+A++RNRQNELLQQQ +NLRRKE                H+
Sbjct: 117 MRGLQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKEH---------------HQ 161

Query: 61  AMWEFQKAAA-VEAHKPVGVVMDQFSFFEXXXXXXXXXXXXXXXXXXXFHPYLQLALPNI 119
           A+ EFQKAAA VEA KP+  VMD FSFFE                   FHPYLQLA PNI
Sbjct: 162 AVLEFQKAAATVEASKPM-YVMDHFSFFE--EQPAGSILQLASPMLPHFHPYLQLAQPNI 218

Query: 120 QD 121
           QD
Sbjct: 219 QD 220


>Glyma13g06820.1 
          Length = 129

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%)

Query: 4  LKYEELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLIQE 58
          L   EL  LEH L+ +I ++R RQN+++ +   +L++K R L++QN TLT  I+E
Sbjct: 4  LNLRELQSLEHQLDTAIKRIRTRQNQVMNESISDLQKKARQLQEQNGTLTKKIKE 58