Miyakogusa Predicted Gene

Lj0g3v0062259.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062259.2 Non Chatacterized Hit- tr|C0PFG6|C0PFG6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,59.65,2e-19,60S ACIDIC
RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein
60S; seg,NULL,CUFF.3017.2
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07850.2                                                       104   2e-23
Glyma10g07850.1                                                       104   2e-23
Glyma0169s00200.2                                                     103   5e-23
Glyma0169s00200.1                                                     103   5e-23
Glyma19g37780.1                                                        96   8e-21
Glyma03g35080.1                                                        92   2e-19
Glyma13g39490.1                                                        81   3e-16
Glyma12g30800.1                                                        80   4e-16
Glyma12g30800.3                                                        78   2e-15
Glyma12g30800.2                                                        69   8e-13

>Glyma10g07850.2 
          Length = 114

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 71/114 (62%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGNN+PSA +IK+I+GSVG +AD+DRI SFLSE+KGKD+ E+IAAGKE
Sbjct: 1   MKVVAAYLLAVLGGNNTPSADDIKEILGSVGIEADEDRIESFLSEVKGKDIVELIAAGKE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLAS                                       SDDDMGFSLFD
Sbjct: 61  KLASVPSGGGGAVAVAAAPGGGGGGAAPAAEVKKEEKVEEKEESDDDMGFSLFD 114


>Glyma10g07850.1 
          Length = 114

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 71/114 (62%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGNN+PSA +IK+I+GSVG +AD+DRI SFLSE+KGKD+ E+IAAGKE
Sbjct: 1   MKVVAAYLLAVLGGNNTPSADDIKEILGSVGIEADEDRIESFLSEVKGKDIVELIAAGKE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLAS                                       SDDDMGFSLFD
Sbjct: 61  KLASVPSGGGGAVAVAAAPGGGGGGAAPAAEVKKEEKVEEKEESDDDMGFSLFD 114


>Glyma0169s00200.2 
          Length = 114

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 70/114 (61%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGNNSPSA  IK+I+GSVG +AD+DRI SFLSE+KGKD+ E+IAAG+E
Sbjct: 1   MKVVAAYLLAVLGGNNSPSADVIKEILGSVGVEADEDRIESFLSEVKGKDIVELIAAGRE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLA+                                       SDDDMGFSLFD
Sbjct: 61  KLATVPSGGGGAVAVAAAPGGGAAAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114


>Glyma0169s00200.1 
          Length = 114

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 70/114 (61%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGNNSPSA  IK+I+GSVG +AD+DRI SFLSE+KGKD+ E+IAAG+E
Sbjct: 1   MKVVAAYLLAVLGGNNSPSADVIKEILGSVGVEADEDRIESFLSEVKGKDIVELIAAGRE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLA+                                       SDDDMGFSLFD
Sbjct: 61  KLATVPSGGGGAVAVAAAPGGGAAAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114


>Glyma19g37780.1 
          Length = 143

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 59/64 (92%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKVIAAY+LAVLGGN +PSA +++ I+GSVG DA+DD I++FLSE+KGKD+AE+IAAG+E
Sbjct: 31 MKVIAAYLLAVLGGNAAPSADDLRTILGSVGADANDDNISNFLSEVKGKDIAELIAAGRE 90

Query: 61 KLAS 64
          KLAS
Sbjct: 91 KLAS 94


>Glyma03g35080.1 
          Length = 113

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 58/64 (90%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKVIAAY+LAVLGGN +PSA +++ I+GSVG DA+DD I++FLSE+KGKD+ E+IA+G+E
Sbjct: 1  MKVIAAYLLAVLGGNAAPSADDLRDILGSVGADANDDNISNFLSEVKGKDIVELIASGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>Glyma13g39490.1 
          Length = 114

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 63/114 (55%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGN SPSA +IK I+G+VG +A+ + I   L+E+KGKD  E++A+G E
Sbjct: 1   MKVVAAYLLAVLGGNPSPSADDIKNILGAVGAEAEHELIELLLTEVKGKDFNELLASGSE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           K+++                                       SDDDMGFSLFD
Sbjct: 61  KISAVAGGGAAVAVAAAPAGGAGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 114


>Glyma12g30800.1 
          Length = 156

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGN SPSA +IK I+G+VG +A+++ I   L+E+KGKD  E+IA+G E
Sbjct: 46  MKVVAAYLLAVLGGNPSPSADDIKHILGAVGAEAENELIELLLTEVKGKDFNELIASGSE 105

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           K+++                                       SDDDMGFSLFD
Sbjct: 106 KMSA---VSGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 156


>Glyma12g30800.3 
          Length = 111

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGN SPSA +IK I+G+VG +A+++ I   L+E+KGKD  E+IA+G E
Sbjct: 1   MKVVAAYLLAVLGGNPSPSADDIKHILGAVGAEAENELIELLLTEVKGKDFNELIASGSE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           K+++                                       SDDDMGFSLFD
Sbjct: 61  KMSA---VSGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 111


>Glyma12g30800.2 
          Length = 109

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MKV+AAY+LAVLGGN SPSA +IK I+G+   +A+++ I   L+E+KGKD  E+IA+G E
Sbjct: 1   MKVVAAYLLAVLGGNPSPSADDIKHILGA--AEAENELIELLLTEVKGKDFNELIASGSE 58

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           K+++                                       SDDDMGFSLFD
Sbjct: 59  KMSA---VSGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 109