Miyakogusa Predicted Gene

Lj0g3v0060019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060019.1 Non Chatacterized Hit- tr|I1JLP3|I1JLP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,48.28,0.00000006,no
description,NULL; Chromo domain-like,Chromo domain-like; Chromo,Chromo
domain; CHROMO_2,Chromo do,CUFF.2657.1
         (60 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g13310.1                                                        62   2e-10
Glyma19g28130.1                                                        52   1e-07

>Glyma03g13310.1 
          Length = 1279

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 3    SEDHELQVYPESVLNVREDSPGNVEVLISWQNLPSCENSWESGARIMKPFQTFTLRTR 60
            SE+ ELQV    +L  RED+ GN++VL+ W  LP+CENSWES  +I++ F  F L  +
Sbjct: 1082 SEEMELQVQSAEILQWREDALGNLKVLVQWDQLPACENSWESAIQILEVFPQFFLEDK 1139


>Glyma19g28130.1 
          Length = 1936

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 2    LSEDHELQVYPESVLNVREDSPGNVEVLISWQNLPSCENSWESGARIMKPFQTFTL 57
            L+E+ ELQV PE V+  +    G  E+LI WQ+LP  E+SWE    I   F  F L
Sbjct: 1871 LNENWELQVQPEKVMQSKISEDGRKEILIKWQDLPHHEDSWELAEEIQTVFSQFDL 1926