Miyakogusa Predicted Gene

Lj0g3v0059259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0059259.1 Non Chatacterized Hit- tr|D7SP48|D7SP48_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,34.07,3e-17,coiled-coil,NULL,CUFF.2628.1
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g24500.1                                                        77   6e-15
Glyma02g05820.1                                                        73   6e-14
Glyma02g05800.1                                                        65   2e-11

>Glyma16g24500.1 
          Length = 81

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 66  PVAVDKNKICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQLSAFLVAKKK 125
           PV+V  ++IC ENI+LF +CEE+R+KETELKQTV +LEE+LK +++KC  LS+ L  K+K
Sbjct: 16  PVSVSPDEICAENIKLFERCEEYREKETELKQTVVDLEEELKQIKKKCDLLSSLLETKRK 75

Query: 126 QKS 128
            KS
Sbjct: 76  AKS 78


>Glyma02g05820.1 
          Length = 88

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 58  ATSTGTPGPVAVDKNKICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQLS 117
            T   TPG V+ D+  IC ENI+LF +CEE+R+KETELKQTV +LE++LK +Q+KC  L 
Sbjct: 16  GTIVETPGSVSPDE--ICAENIKLFERCEEYRQKETELKQTVVDLEDELKQIQKKCTLLV 73

Query: 118 AFLVAKKKQKS 128
           + +  K+K KS
Sbjct: 74  SLVETKRKAKS 84


>Glyma02g05800.1 
          Length = 594

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 42/79 (53%), Gaps = 16/79 (20%)

Query: 1   MVNDYWKGHCHLVGYQPLNFKSQ-NVQKETQIRQSAGRSTNTQN-------------VHQ 46
           M  DYW+ HCHLVGYQP N KSQ NV KE  IR+SA  STN QN              HQ
Sbjct: 512 MTMDYWREHCHLVGYQPPNLKSQKNVVKEAHIRKSAEHSTNPQNQLLADQQDTSLVAEHQ 571

Query: 47  DDLYIDQTIAGATSTGTPG 65
             L   Q++ G   TG  G
Sbjct: 572 SGL--SQSVVGLAVTGMQG 588