Miyakogusa Predicted Gene
- Lj0g3v0056929.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0056929.1 tr|G7JB15|G7JB15_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_3g107100 PE=4
SV=1,63.64,0.000000000004,FAMILY NOT NAMED,NULL; FBD,FBD; domain in
FBox and BRCT domain containing pl,FBD; seg,NULL,5713_g.1
(92 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g35370.1 60 6e-10
Glyma18g35360.1 55 2e-08
Glyma18g35330.1 51 2e-07
Glyma17g05620.1 51 3e-07
Glyma08g46590.2 50 7e-07
Glyma08g46320.1 49 9e-07
>Glyma18g35370.1
Length = 409
Score = 60.1 bits (144), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 7 WADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPAISRRQIK 66
W P VPECLL +LKT R ++ LE EL YI++NARVL+TM I ++ +
Sbjct: 330 WIHPLLVPECLL-HLKTFCLREYQGLETELDFVGYIMQNARVLETMTIYISSSLGSEEKL 388
Query: 67 MIREXXXXXXXXXXRCQIIAH 87
IR CQI+ H
Sbjct: 389 QIRRHLSILQRNFETCQIVFH 409
>Glyma18g35360.1
Length = 357
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 5 ENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKIL-TGPAISRR 63
ENW VP+CL LKTC F+ +E E E Q ARYI++NAR L I TG +
Sbjct: 246 ENWVYSHLVPKCLSSKLKTCRFQKYEGWECEFQFARYIMQNARALCAFTICSTGFSPLAA 305
Query: 64 QIKMIR 69
+ +MI+
Sbjct: 306 KFQMIK 311
>Glyma18g35330.1
Length = 342
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 10 PDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILT-GPAISRRQIKMI 68
P FVP+CL LK C + + E EL+ ARY+L+NARVL +M I + + S +++MI
Sbjct: 271 PQFVPKCLSTQLKRCCVKKYGGQESELRFARYVLQNARVLYSMTIYSISSSNSGERLQMI 330
Query: 69 RE 70
++
Sbjct: 331 KK 332
>Glyma17g05620.1
Length = 158
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 7 WADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPA 59
W+ P +P C+ L+LKTC + + E Q ARYI++NA LQTM I T +
Sbjct: 78 WSYPQSIPTCVSLHLKTCRLTNYVGSKGEFQFARYIMQNASHLQTMTICTNTS 130
>Glyma08g46590.2
Length = 380
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 6 NWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILT 56
+W P VP + L+LKTC R + + EL+ ARYI++NAR L+TMKI T
Sbjct: 298 DWPFPRSVPSSISLHLKTCFIRCYGGSKGELRFARYIMRNARHLRTMKIST 348
>Glyma08g46320.1
Length = 379
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 4 PENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKI 54
P W P VPEC+ L+ C+ ++ + ELQ A+YIL+N+R LQ+M I
Sbjct: 290 PMVWTFPQIVPECISSKLRRCTIMNYKGKKYELQFAKYILQNSRALQSMTI 340