Miyakogusa Predicted Gene

Lj0g3v0054359.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054359.2 Non Chatacterized Hit- tr|Q9T0C2|Q9T0C2_ARATH
Putative uncharacterized protein AT4g10650
OS=Arabidop,46.43,1e-16,GTP-BINDING PROTEIN-RELATED,NULL; no
description,NULL,CUFF.2424.2
         (134 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g16740.1                                                       109   7e-25
Glyma03g29110.1                                                        76   9e-15
Glyma19g31920.1                                                        74   4e-14
Glyma19g33870.1                                                        55   3e-08
Glyma19g33870.2                                                        54   4e-08

>Glyma08g16740.1 
          Length = 197

 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 1  MAAASHLGRRIGTALKEMIGSKKRAPWHDSLMAAASTAIVERIPLVDIIVHVRDARIPSS 60
          M+AA+ LGRR+GT  KE +   K A W D L AAAS AI ERIPL D++V VRDARIP S
Sbjct: 1  MSAAARLGRRVGTTAKEELRRNKGA-WRDPLPAAASRAIAERIPLADLVVQVRDARIPLS 59

Query: 61 SECHLLKNCPSSSKQIIALNKSDLACSSGLQAW 93
          SEC +L+N P S KQI+ALNK DL  +S ++ W
Sbjct: 60 SECEILRNYPPSLKQIVALNKMDLVGTSNVKVW 92


>Glyma03g29110.1 
          Length = 377

 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L+   S+ ++++ALNK DLA 
Sbjct: 28  WFPGHMAAATRAIRHRLKLADLVIEVRDARIPLSSANADLQPHLSAKRRVVALNKKDLAN 87

Query: 87  SSGLQAWTEYFAENNCISCGVNAHNKESIRKV 118
            + +  WT YF   N     +NAH+K S++K+
Sbjct: 88  PNIMHKWTHYFETCNQNCVAINAHSKSSVKKL 119


>Glyma19g31920.1 
          Length = 377

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L+   S+ ++++ALNK DLA 
Sbjct: 28  WFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSSANADLQPHLSAKRRVVALNKKDLAN 87

Query: 87  SSGLQAWTEYFAENNCISCGVNAHNKESIRKV 118
            + +  WT YF   N     +NAH+  S++K+
Sbjct: 88  PNIMHKWTHYFESCNQNCVAINAHSMSSVKKL 119


>Glyma19g33870.1 
          Length = 366

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    +A A   + E++ L+D+++ VRD RIP S+    +     + K+I+ LN+ D+  
Sbjct: 92  WFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMIS 151

Query: 87  SSGLQAWTEYFAENNCISCGVNAHNKESIRKVYFSN 122
           ++   AW +YF  N                KV FSN
Sbjct: 152 TADRNAWADYFTRNGT--------------KVVFSN 173


>Glyma19g33870.2 
          Length = 358

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 14/96 (14%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    +A A   + E++ L+D+++ VRD RIP S+    +     + K+I+ LN+ D+  
Sbjct: 92  WFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMIS 151

Query: 87  SSGLQAWTEYFAENNCISCGVNAHNKESIRKVYFSN 122
           ++   AW +YF  N                KV FSN
Sbjct: 152 TADRNAWADYFTRNGT--------------KVVFSN 173